Browse Element(s) Details


Os.46025.1.S1_at

Description gb:NM_193150.1
DB_XREF= gi:34913383
GEN=B1147B04.12
TID=Os.46025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1147B04.12 (B1147B04.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1147B04.12 (B1147B04.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3423011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34190Os.17820.1.A1_at11/111+19175205..19178661G-patch domain containing protein, expressed
LOC_Os01g34200Os.28207.1.S1_at10/111+19180422..19184170rRNA processing protein, putative, expressed
LOC_Os01g34220OsAffx.2150.1.S1_at11/111+19196558..19197580F-box domain containing protein
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein
LOC_Os01g34240NANA1+19205536..19206075hypothetical protein
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34260OsAffx.23506.1.S1_at9/111+19214999..19215232hypothetical protein
LOC_Os01g34270OsAffx.23507.1.S1_at11/111+19219586..19220617F-box domain containing protein
LOC_Os01g34290Os.26886.6.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.2.S1_s_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.1.S1_x_at11/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16467.1.S1_at7/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_at6/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290Os.26886.3.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.26148.1.S1_x_at5/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.31076.1.S1_x_at3/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34290OsAffx.16244.1.S1_x_at1/111+19226081..19233044transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46025.1.S1_at--439--1072Chr11:16213552..16213571 (20 bp)
AGGGAGTTGCGGATCTGAGCGAGGG
NONE
Os.46025.1.S1_at--556--471Chr01:19203032..19203056 (25 bp)
ATCTGAGCGAGGGTGAAGACCCACA
LOC_Os01g34230
Os.46025.1.S1_at--45--4631Chr01:19203038..19203062 (25 bp)
GCGAGGGTGAAGACCCACAGGACTA
LOC_Os01g34230
Os.46025.1.S1_at--16--1053Chr03:8967388..8967849 (25 bp)
AGGGTGAAGACCCACAGGACTACGA
NONE
Os.46025.1.S1_at--740--7352Chr01:19203044..19203068 (25 bp)
GTGAAGACCCACAGGACTACGAGCA
LOC_Os01g34230
Os.46025.1.S1_at--70--5373Chr03:8967831..8967854 (24 bp)
GAAGACCCACAGGACTACGAGCAAG
NONE
Os.46025.1.S1_at--118--2774Chr03:8967831..8967855 (25 bp)
AAGACCCACAGGACTACGAGCAAGG
NONE
Os.46025.1.S1_at--288--5816Chr05:17022682..17022884 (25 bp)
GACCCACAGGACTACGAGCAAGGCA
NONE
Os.46025.1.S1_at--638--18110Chr05:17031401..17031420 (20 bp)
ACCCACAGGACTACGAGCAAGGCAA
NONE
Os.46025.1.S1_at--897--4354Chr05:17031401..17031422 (22 bp)
CCACAGGACTACGAGCAAGGCAAGT
NONE
Os.46025.1.S1_at--512--3315Chr11:20119605..20119624 (20 bp)
CACAGGACTACGAGCAAGGCAAGTC
NONE
Target Sequence 
AGGGAGTTGCGGATCTGAGCGAGGGTGAAGACCCACAGGACTACGAGCAAGGCAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis