Browse Element(s) Details


Os.46070.3.S1_at

Description gb:NM_194626.1
DB_XREF= gi:37530611
TID=Os.46070.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46070 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA2-NAM7 helicase family protein (OSJNBa0079B05.7), mRNA.
PROD=putative DNA2-NAM7 helicase family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0293011/11Helicase SEN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02940OsAffx.30249.1.S1_at11/1110+1198323..1199011hypothetical protein
LOC_Os10g02950NANA10+1200149..1200574hypothetical protein
LOC_Os10g02960NANA10+1201677..1206027retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46070.3.S1_at--915--2731Chr10:1178074..1178146 (25 bp)
AAGAAGAGAACCCTGGACAGTCTTG
LOC_Os10g02930
Os.46070.3.S1_at--184--8751Chr10:1177718..1177941 (25 bp)
TGTAAGCCTCAGATATACATGCATG
LOC_Os10g02930
Os.46070.3.S1_at--726--8471Chr10:1177176..1177672 (25 bp)
TGGCTCTAGAGCAGGCTTGGTCTAT
LOC_Os10g02930
Os.46070.3.S1_at--304--1371Chr10:1177169..1177189 (21 bp)
AGAGCAGGCTTGGTCTATATCTGAA
LOC_Os10g02930
Os.46070.3.S1_at--1050--8251Chr10:1177163..1177187 (25 bp)
GGCTTGGTCTATATCTGAATTCCTG
LOC_Os10g02930
Os.46070.3.S1_at--948--7811Chr10:1177158..1177182 (25 bp)
GGTCTATATCTGAATTCCTGCTGTT
LOC_Os10g02930
Os.46070.3.S1_at--455--251Chr10:1177153..1177177 (25 bp)
ATATCTGAATTCCTGCTGTTTGGGA
LOC_Os10g02930
Os.46070.3.S1_at--1156--3151Chr10:1177146..1177170 (25 bp)
AATTCCTGCTGTTTGGGAGGATGCT
LOC_Os10g02930
Os.46070.3.S1_at--491--7651Chr10:1177132..1177156 (25 bp)
GGGAGGATGCTGGTTCTCTCTTCCA
LOC_Os10g02930
Os.46070.3.S1_at--1009--7891Chr10:1177121..1177145 (25 bp)
GGTTCTCTCTTCCATTTTGCAAGCA
LOC_Os10g02930
Os.46070.3.S1_at--1112--9511Chr10:1177118..1177142 (25 bp)
TCTCTCTTCCATTTTGCAAGCAGCC
LOC_Os10g02930
Target Sequence 
AAGAAGAGAACCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATG
GGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGT
AAGCCTCAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCA
GGCTTGGTCTATATCTGAATTCCTGCTGTTTGGGAGGATGCTGGTTCTCTCTTCCATTTTGCAAGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46070.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis