Browse Element(s) Details


Os.46124.1.S1_at

Description gb:AK120199.1
DB_XREF= gi:37989822
TID=Os.46124.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037C01, full insert sequence.
FL= gb:AK120199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5664011/11transcription factor jumonji, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56600Os.11758.1.S1_at11/111+32979330..32983443Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os01g56610Os.32439.1.S1_at11/111+32983604..32985329Homocysteine S-methyltransferase 4, putative, expressed
LOC_Os01g56620OsAffx.21592.2.S1_at11/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620OsAffx.21592.1.S1_x_at6/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56620Os.49125.1.S1_s_at1/111+32987548..32994030tRNA pseudouridine synthase D family protein, expressed
LOC_Os01g56630Os.11030.1.S1_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56630Os.11030.2.S1_x_at11/111+32996390..33003255Dymeclin, putative, expressed
LOC_Os01g56640Os.46124.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.52837.1.S1_x_at11/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56640Os.10599.1.S1_x_at10/111+33002828..33008255transcription factor jumonji, putative, expressed
LOC_Os01g56650OsAffx.9407.1.S1_at11/111+33009831..33010235hypothetical protein
LOC_Os01g56660OsAffx.21591.1.S1_at11/111+33020608..33023334hypothetical protein
LOC_Os01g56670Os.17630.1.S1_s_at11/111+33025872..33036119Glycosyl hydrolase family 47 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46124.1.S1_at--799--5371Chr01:33003314..33003338 (25 bp)
GAAGCATGTAAATCCTAGGGTTTGT
LOC_Os01g56640
Os.46124.1.S1_at--400--10491Chr01:33003257..33003281 (25 bp)
TTCAAGGTTACATTGGCGGGCCTCG
LOC_Os01g56640
Os.46124.1.S1_at--307--4471Chr01:33003238..33003262 (25 bp)
GCCTCGTGGTGCTTACAAAGGGTCA
LOC_Os01g56640
Os.46124.1.S1_at--575--7691Chr01:33003219..33003243 (25 bp)
GGGTCAGTGAGCAAACTTCCCCTCG
LOC_Os01g56640
Os.46124.1.S1_at--1153--3631Chr01:33003204..33003228 (25 bp)
CTTCCCCTCGGAATGATGTTATTTT
LOC_Os01g56640
Os.46124.1.S1_at--462--6271Chr01:33003190..33003214 (25 bp)
GATGTTATTTTTCAGGCAATTCCTT
LOC_Os01g56640
Os.46124.1.S1_at--665--10171Chr01:33003152..33003176 (25 bp)
TATAACGGTACTACCCAGCCAAAAG
LOC_Os01g56640
Os.46124.1.S1_at--1131--6591Chr01:33003110..33003134 (25 bp)
GTTGGTCTCTCCGTTCCAAAATGGA
LOC_Os01g56640
Os.46124.1.S1_at--763--431Chr01:33003056..33003080 (25 bp)
ATCTTCGCTCGGGTGGCGGGTTCAC
LOC_Os01g56640
Os.46124.1.S1_at--433--1031Chr01:33002999..33003023 (25 bp)
AGGTAAGAGGTACTCCACCTTCCAT
LOC_Os01g56640
Os.46124.1.S1_at--831--1571Chr01:33002950..33002974 (25 bp)
AGCGTACTTGTAATACCTTCCAATC
LOC_Os01g56640
Target Sequence 
GAAGCATGTAAATCCTAGGGTTTGTCTTAACCNGAAAATTTTGTGCCNGTGGTTTTGGTTCAAGGTTACATTGGCGGGCC
TCGTGGTGCTTACAAAGGGTCAGTGAGCAAACTTCCCCTCGGAATGATGTTATTTTTCAGGCAATTCCTTGGTTCTTTGA
ACTTATAACGGTACTACCCAGCCAAAAGCTATATTTTGGGACGGAGTTGGTCTCTCCGTTCCAAAATGGAGGTACTTACA
GTAGTACTAAAAAGCNGTGATCTTCGCTCGGGTGGCGGGTTCACCTTTTCTTTTTGGAAATGTTTCACCGTTTGGAAGGT
AAGAGGTACTCCACCTTCCATTCAAACAAATACAAACGATTTAACAGCGTACTTGTAATACCTTCCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis