Browse Element(s) Details


Os.46130.1.S1_a_at

Description gb:AK064032.1
DB_XREF= gi:32974050
TID=Os.46130.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (OSJNBa0082M15.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B10, full insert sequence.
FL= gb:AK064032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4006011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40110Os.3284.1.S1_at11/1110+21143911..21147557chloroplast outer membrane protein, putative, expressed
LOC_Os10g40120OsAffx.30731.1.S1_at11/1110+21149739..21152329U-box domain containing protein, expressed
LOC_Os10g40130Os.3278.1.S1_at11/1110+21153054..21156614UDP-N-acetylmuramyl-tripeptide synthetases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46130.1.S1_a_at--170--3611Chr10:21125098..21125122 (25 bp)
CATTGTCCCAGTCTTTTCGATCTAT
LOC_Os10g40060
Os.46130.1.S1_a_at--307--10311Chr10:21125084..21125108 (25 bp)
TTTCGATCTATCTGTAGTGCCATTG
LOC_Os10g40060
Os.46130.1.S1_a_at--915--8711Chr10:21125072..21125096 (25 bp)
TGTAGTGCCATTGAAACTGCCACCC
LOC_Os10g40060
Os.46130.1.S1_a_at--963--5651Chr10:21124722..21124746 (25 bp)
GACAGGTCTCCAGTGACTAACCAAA
LOC_Os10g40060
Os.46130.1.S1_a_at--330--10711Chr10:21124694..21124718 (25 bp)
TTGCTAACTGTGACACTATCCCCAA
LOC_Os10g40060
Os.46130.1.S1_a_at--891--2031Chr10:21124680..21124704 (25 bp)
ACTATCCCCAATATCGCACTGCGTT
LOC_Os10g40060
Os.46130.1.S1_a_at--416--1991Chr10:21124663..21124687 (25 bp)
ACTGCGTTCGGCCATTCAAGAATAT
LOC_Os10g40060
Os.46130.1.S1_a_at--326--271Chr10:21124603..21124627 (25 bp)
ATATGAACAGCAGCATTAGTGGCCT
LOC_Os10g40060
Os.46130.1.S1_a_at--919--10071Chr10:21124587..21124611 (25 bp)
TAGTGGCCTGTATTGAGTTTCATCT
LOC_Os10g40060
Os.46130.1.S1_a_at--481--1211Chr10:21124572..21124596 (25 bp)
AGTTTCATCTGTGCTTCGACTGTAA
LOC_Os10g40060
Os.46130.1.S1_a_at--422--7071Chr10:21124551..21124575 (25 bp)
GTAATAGATCGTTTCTGTGCCAGTA
LOC_Os10g40060
Target Sequence 
CATTGTCCCAGTCTTTTCGATCTATCTGTAGTGCCATTGAAACTGCCACCCCGTCCTACTTCCTTTGCCCAATCTCTCAG
GTNNNNNNNNNNNNNNNNNNGACCATGAGAGATCCTCAGATGNCAGCGGATGGCTTCACCTATGAAGCTGATGCTATAAG
AGATTGGCTGGATAAGGGACATGACAGGTCTCCAGTGACTAACCAAACACTTGCTAACTGTGACACTATCCCCAATATCG
CACTGCGTTCGGCCATTCAAGAATATCTCAAGCAGAACAACATGAACAAGTCATTTGCACTATATGAACAGCAGCATTAG
TGGCCTGTATTGAGTTTCATCTGTGCTTCGACTGTAATAGATCGTTTCTGTGCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46130.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis