Browse Element(s) Details


Os.46313.1.S1_at

Description gb:AK072221.1
DB_XREF= gi:32982244
TID=Os.46313.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0013J21.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013166C23, full insert sequence.
FL= gb:AK104961.1 gb:AK072221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0459010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46313.1.S1_at--87--9771Chr10:2171426..2171450 (25 bp)
TACAGGCTATAGTGTCCAACGGGTT
LOC_Os10g04590
Os.46313.1.S1_at--743--10871Chr10:2171449..2171473 (25 bp)
TTGGCGAGTTGACCAACCAAGCAAT
LOC_Os10g04590
Os.46313.1.S1_at--259--2051Chr10:2171493..2171517 (25 bp)
ACTTCTTAGTTGTACCCATACCAAG
LOC_Os10g04590
Os.46313.1.S1_at--137--231NONE
ATACCAAGACTTGCCAAGGCCCAAG
NONE
Os.46313.1.S1_at--702--9471Chr10:2172359..2172383 (25 bp)
TCTGATACCATGCAAGACCAGCTGC
LOC_Os10g04590
Os.46313.1.S1_at--77--1611Chr10:2172378..2172402 (25 bp)
AGCTGCTACTGGTTGTAATGGCATC
LOC_Os10g04590
Os.46313.1.S1_at--1148--6531Chr10:2172403..2172427 (25 bp)
GATTTATTGCTACTCTTCTTTCTTT
LOC_Os10g04590
Os.46313.1.S1_at--251--2351Chr10:2172477..2172501 (25 bp)
AAAGCATAGTATTCAGGCTGCCCCG
LOC_Os10g04590
Os.46313.1.S1_at--465--211Chr10:2172577..2172601 (25 bp)
ATTTGAGTACGGGAGGCTCTCTTTC
LOC_Os10g04590
Os.46313.1.S1_at--27--9511Chr10:2172594..2172618 (25 bp)
TCTCTTTCCTTGCTACTAGTTTCAG
LOC_Os10g04590
Os.46313.1.S1_at--1102--6591Chr10:2172618..2172642 (25 bp)
GATTGGCTACATCTGCACCGTAAAC
LOC_Os10g04590
Target Sequence 
TACAGGCTATAGTGTCCAACGGGTTGGCGAGTTGACCAACCAAGCAATGAAGCAAGTAACCTAACAAACTTCTTAGTTGT
ACCCATACCAAGACTTGCCAAGGCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGAC
CAGCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCTTATGCTGCATTTTGGAAC
TAAAGTTGCTAGTAGTTTGCAAAGCATAGTATTCAGGCTGCCCCGCCCCTGATGCATATGATGCATTTCAGTGTATGCTC
GTTGTTAATTAAGTTTGTTGTTATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTC
AGATTGGCTACATCTGCACCGTAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis