Browse Element(s) Details


Os.46314.3.S1_at

Description gb:NM_195094.1
DB_XREF= gi:37531547
TID=Os.46314.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46314 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative tnp2 transposase (OSJNBa0061H20.14), mRNA.
PROD=putative tnp2 transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0928011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g158005/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g153205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g571604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g287504/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g490304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g215104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g017604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g158104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g177204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g246904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g197203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g242803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g113503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g144203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g280403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g307303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g145603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g036203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g304003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g132403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g251603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g395943/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g099003/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g296402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g221502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g217302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g285902/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g458202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g462702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g113602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g087802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g335902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g106802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g097602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g195202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g237602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g157502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g209701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g166401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g127801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g250101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g040901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g203301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09320NANA10+4806686..4807186transposon protein, putative, unclassified
LOC_Os10g09330NANA10+4809446..4810262hypothetical protein
LOC_Os10g09340OsAffx.6614.1.S1_at11/1110+4810687..4811333hypothetical protein
LOC_Os10g09350Os.46012.2.S1_x_at10/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.46012.3.S1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.27088.1.A1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46314.3.S1_at--223--2395Chr10:4787105..4787129 (25 bp)
AAACGGTTGGCTTGTGGTCCATCAA
LOC_Os10g09280
Os.46314.3.S1_at--774--49335Chr12:14353599..14353623 (25 bp)
GCTTGTGGTCCATCAACTACAGTAA
NONE
Os.46314.3.S1_at--575--4511Chr10:4787186..4787210 (25 bp)
GCCCGAGATAATAAAACCTGTACGC
LOC_Os10g09280
Os.46314.3.S1_at--883--4271Chr10:4787202..4787226 (25 bp)
CCTGTACGCAAAACATCGGTGTCCG
LOC_Os10g09280
Os.46314.3.S1_at--87--3557Chr10:4787215..4787239 (25 bp)
CATCGGTGTCCGTGTGGAGGCAATT
LOC_Os10g09280
Os.46314.3.S1_at--581--81526Chr12:14353775..14353799 (25 bp)
GGAAATCGACTATGGGCACACAATG
NONE
Os.46314.3.S1_at--390--51330Chr11:17391658..17391682 (25 bp)
GCACACAATGCAATTCCCCATATTT
LOC_Os11g30730
Os.46314.3.S1_at--577--7271Chr10:4787332..4787356 (25 bp)
GTGCCAGTGGCAAAAATACCCGAAC
LOC_Os10g09280
Os.46314.3.S1_at--986--9551Chr10:4787380..4787404 (25 bp)
TCTTATTGTTGTTGACCTGGCGAGT
LOC_Os10g09280
Os.46314.3.S1_at--87--6934Chr11:17391771..17391795 (25 bp)
ATGACCCTTGGGTACTCGCCAATCG
NONE
Os.46314.3.S1_at--86--2819Chr12:14353972..14353996 (25 bp)
AAGATATAGTGCTACCCGGGAAACA
LOC_Os12g25010
Target Sequence 
AAACGGTTGGCTTGTGGTCCATCAACTACAGTAAATTCTTGGCAAGGATATGACATTAATGGATACTCGTTTAGTACAAG
AGCCCGAGATAATAAAACCTGTACGCAAAACATCGGTGTCCGTGTGGAGGCAATTGATGAAGCCAGGGAAAAACAATCAT
ACTTCGGGTTTATTGAAGAAATATGGGAAATCGACTATGGGCACACAATGCAATTCCCCATATTTAAGTGCCAGTGGCAA
AAATACCCGAACGGGGTCAATGTTGATAAGTTCGGTCTTATTGTTGTTGACCTGGCGAGTGTGGGTCACAAGGATGACCC
TTGGGTACTCGCCAATCGCGTGGCACAAGTGTTTTATGTGAAAGTCCCTTCAAATTTGAAGAAAGATATAGTGCTACCCG
GGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46314.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis