Browse Element(s) Details


Os.46382.4.S1_x_at

Description gb:NM_197176.1
DB_XREF= gi:37535711
TID=Os.46382.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46382 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.17), mRNA.
PROD=putative membrane-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g352203/11KH domain containing protein, expressed
LOC_Os10g350902/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46382.4.S1_x_at--828--8531Chr10:18627956..18627980 (25 bp)
TGGAGAACTGCCCTCATCTATTAGT
NONE
Os.46382.4.S1_x_at--317--8611Chr10:18627983..18628007 (25 bp)
TGGTGCCGATTATATGTCCTGCCGT
NONE
Os.46382.4.S1_x_at--310--3831Chr10:18628001..18628025 (25 bp)
CTGCCGTTCTTATCTTGACCAAGTA
NONE
Os.46382.4.S1_x_at--920--3131Chr10:18628060..18628084 (25 bp)
AATTAGGCCTCTCGAGAGCCGGGAA
NONE
Os.46382.4.S1_x_at--469--4771Chr10:18628587..18628611 (25 bp)
GCTGCTGAGCAGATCCATGGACGTG
NONE
Os.46382.4.S1_x_at--1117--2753Chr10:18628622..18628646 (25 bp)
AAGACTGTCAGGTCTCACTGGGTAT
NONE
Os.46382.4.S1_x_at--70--3471Chr10:18628731..18628755 (25 bp)
CAGGTGGCTCTTCGAATTGTGGATT
NONE
Os.46382.4.S1_x_at--1037--6751Chr10:18628763..18628787 (25 bp)
GTTAACTGGAGTCTGTCATTGGTGT
NONE
Os.46382.4.S1_x_at--869--7352Chr10:18628932..18628956 (25 bp)
GTGAAGTTGCACGAAGCCCATCCTG
NONE
Os.46382.4.S1_x_at--661--7892Chr10:18628956..18628980 (25 bp)
GGTTCTTCCGAGTCCATTGTGGAGA
NONE
Os.46382.4.S1_x_at--186--2872Chr10:18628999..18629023 (25 bp)
AAGTGAAAGCCGCACAGAGCCTTCT
NONE
Target Sequence 
TGGAGAACTGCCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCTGCCGTTCTTATCTTGACCAAGTACCTACTGATA
GGTACTCTAATAGGGTTACACTACAATTAGGCCTCTCGAGAGCCGGGAATAGTAATGTGCAACAATTAGGAATCACCAGA
GCTGGAAATTCCAATGCTTATGATTATACTGAGGCTGCTGAGCAGATCCATGGACGTGAGGATTACCGAAGACTGTCAGG
TCTCACTGGGTATCCAGGTGGCTCTTCGAATTGTGGATTCCAAATAGTTAACTGGAGTCTGTCATTGGTGTTGGTGATCT
CTGGTGCGAGAGTGAAGTTGCACGAAGCCCATCCTGGTTCTTCCGAGTCCATTGTGGAGATCCAGGGCATTCCGGATCAA
GTGAAAGCCGCACAGAGCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46382.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis