Browse Element(s) Details


Os.46460.1.S1_at

Description gb:AK099992.1
DB_XREF= gi:32985201
TID=Os.46460.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0013J21.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132B13, full insert sequence.
FL= gb:AK099992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0461011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46460.1.S1_at--608--7291Chr10:2182521..2182545 (25 bp)
GTGCGTACATAATTTATCTCCCCAG
LOC_Os10g04610
Os.46460.1.S1_at--733--6311Chr10:2182718..2182742 (25 bp)
GATGACTCTGTTAACCTAACCTGAC
LOC_Os10g04610
Os.46460.1.S1_at--28--9811Chr10:2182734..2182758 (25 bp)
TAACCTGACATTCCTGTTCTCTTGT
LOC_Os10g04610
Os.46460.1.S1_at--879--8791Chr10:2182748..2182772 (25 bp)
TGTTCTCTTGTCACATTGGTCAGGA
LOC_Os10g04610
Os.46460.1.S1_at--697--9891Chr10:2182838..2182862 (25 bp)
TACTACCGGCGTTGGCATCGATATG
LOC_Os10g04610
Os.46460.1.S1_at--1064--1851Chr10:2182879..2182903 (25 bp)
ACGAGCTTAGTTCGATCGGCTGTTC
LOC_Os10g04610
Os.46460.1.S1_at--409--6932Chr10:2182921..2182945 (25 bp)
GTAGTGGTTTAGCTTCTGAAGTCTT
LOC_Os10g04610
Os.46460.1.S1_at--1033--8991Chr10:2182937..2182961 (25 bp)
TGAAGTCTTGCTACTCTTCTTTTGC
LOC_Os10g04610
Os.46460.1.S1_at--137--2891Chr10:2183012..2183036 (25 bp)
AAGGTAGGCATTCAGGCTTATACAC
LOC_Os10g04610
Os.46460.1.S1_at--90--8311Chr10:2183026..2183050 (25 bp)
GGCTTATACACGATGCACTTCAATG
LOC_Os10g04610
Os.46460.1.S1_at--584--5111Chr10:2183040..2183064 (25 bp)
GCACTTCAATGTATGCTCTTGTTGT
LOC_Os10g04610
Target Sequence 
GTGCGTACATAATTTATCTCCCCAGATAGAATAAACAGTTTGCCAAAAAAGCATGACCACACTAGGACATATATATGTTT
GGCATCTTGAAACACTTAATATTTCTGACATTTTGATGTCCAGATTCATTGACATTTTGGTGTCAAATCACCACCTAGGT
TACCTTTTTTTGGGACGGAGAGAGTAGAATGTTAATTGATGACTCTGTTAACCTAACCTGACATTCCTGTTCTCTTGTCA
CATTGGTCAGGACTTAAAAAGGGGGACAGAGTAGCTTCTGTTGTGAAAATGTGTTGCAAGACCAGCTGCTAGCCTGCTAC
TACCGGCGTTGGCATCGATATGTATATATATCTACTGTACGAGCTTAGTTCGATCGGCTGTTCCATTTGAATTCTATAGT
GTAGTGGTTTAGCTTCTGAAGTCTTGCTACTCTTCTTTTGCCCATATATATGCTGCATTCTGGAACTAATAAATAAAGTA
GCTAGTCTGCAAAGGTAGGCATTCAGGCTTATACACGATGCACTTCAATGTATGCTCTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis