Browse Element(s) Details


Os.4647.1.S1_at

Description gb:AK105290.1
DB_XREF= gi:32990499
TID=Os.4647.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F09, full insert sequence.
FL= gb:AK105290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0343011/11Sumoylation ligase E3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03390Os.23340.1.S1_at11/115+1375331..1380822expressed protein
LOC_Os05g03400Os.51646.1.S1_at11/115+1388150..1390874expressed protein
LOC_Os05g03410OsAffx.26713.1.S1_at11/115+1395499..1399440hypothetical protein
LOC_Os05g03420NANA5+1400168..1401940hypothetical protein
LOC_Os05g03430Os.4647.1.S1_at11/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03430Os.18396.1.S1_at1/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03440NANA5+1419297..1420454hypothetical protein
LOC_Os05g03450Os.48037.1.A1_x_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03450Os.48037.1.A1_at11/115+1432746..1435269Protein kinase domain containing protein, expressed
LOC_Os05g03460OsAffx.14525.1.S1_at11/115+1439388..1441806Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os05g03480Os.28409.20.A1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.38599.3.S1_a_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os05g03480Os.47660.1.S1_s_at11/115+1441203..1452108Isovaleryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0019789molecular_functionSUMO ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4647.1.S1_at--976--2251Chr05:1415146..1415170 (25 bp)
AAATATATTTTCTCATCCTCGCCAG
LOC_Os05g03430
Os.4647.1.S1_at--1056--1671Chr05:1415169..1415193 (25 bp)
AGCCTCGGTCTGTTAGGCCTCGACT
LOC_Os05g03430
Os.4647.1.S1_at--1161--871Chr05:1415183..1415207 (25 bp)
AGGCCTCGACTCTGTTTATCAATAG
LOC_Os05g03430
Os.4647.1.S1_at--136--1971Chr05:1415210..1415234 (25 bp)
ACTGATTCTGAGTAGTTTGGACATC
LOC_Os05g03430
Os.4647.1.S1_at--1076--8231Chr05:1415265..1415289 (25 bp)
GGCAAAGCTGCCATCCAGAAATCAT
LOC_Os05g03430
Os.4647.1.S1_at--1100--6771Chr05:1415308..1415332 (25 bp)
GTTATCGGTCGTCTGGTTGATGTAA
LOC_Os05g03430
Os.4647.1.S1_at--973--2331Chr05:1415331..1415355 (25 bp)
AAAGAAAAACACCAGCATTGATGCT
LOC_Os05g03430
Os.4647.1.S1_at--943--8851Chr05:1415349..1415373 (25 bp)
TGATGCTTTGTTGCCTCAATGGTTT
LOC_Os05g03430
Os.4647.1.S1_at--807--4451Chr05:1415361..1415385 (25 bp)
GCCTCAATGGTTTACAAGCTTTCAA
LOC_Os05g03430
Os.4647.1.S1_at--496--2871Chr05:1415384..1415408 (25 bp)
AAGTGTTCTATTTGATCCAGGAGGG
LOC_Os05g03430
Os.4647.1.S1_at--1090--7651Chr05:1415406..1415430 (25 bp)
GGGATCTGCATAGAGGACATCTGAT
LOC_Os05g03430
Target Sequence 
AAATATATTTTCTCATCCTCGCCAGCCTCGGTCTGTTAGGCCTCGACTCTGTTTATCAATAGATACTGATTCTGAGTAGT
TTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTTGGCAAAGCTGCCATCCAGAAATCATGATTTATACTGAGGTG
GGGTTATCGGTCGTCTGGTTGATGTAAAGAAAAACACCAGCATTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAA
GTGTTCTATTTGATCCAGGAGGGATCTGCATAGAGGACATCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis