Browse Element(s) Details


Os.46487.1.S1_at

Description gb:AK071645.1
DB_XREF= gi:32981668
TID=Os.46487.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015F09b.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105M22, full insert sequence.
FL= gb:AK071645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3071911/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30680OsAffx.30613.1.S1_x_at11/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_x_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30690OsAffx.8079.1.S1_at11/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.53952.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.8736.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30700OsAffx.8078.1.S1_at11/1110+15660389..15661583hypothetical protein
LOC_Os10g30719OsAffx.18467.1.S1_s_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719Os.46487.1.S1_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30750Os.5293.1.S1_at11/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30750OsAffx.25182.1.S1_s_at1/1110+15687438..15691986appr-1-p processing enzyme family protein, putative, expressed
LOC_Os10g30760Os.24630.1.A1_at11/1110+15692353..15695114pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46487.1.S1_at--414--2531Chr10:15670640..15670664 (25 bp)
AACTATGCTTTGGAACCACTAGAGA
LOC_Os10g30719
Os.46487.1.S1_at--1112--6531Chr10:15670777..15670801 (25 bp)
GATTTTTTCTCCACATCCATTCGAA
LOC_Os10g30719
Os.46487.1.S1_at--43--4311Chr10:15670793..15670817 (25 bp)
CCATTCGAACTTCTGTCCATCTGAA
LOC_Os10g30719
Os.46487.1.S1_at--713--1451Chr10:15671070..15671094 (25 bp)
AGAAGACAATGCTATGGCCCCTTGA
LOC_Os10g30719
Os.46487.1.S1_at--668--8411Chr10:15671085..15671109 (25 bp)
GGCCCCTTGATAAACGATTGACTGA
LOC_Os10g30719
Os.46487.1.S1_at--410--9991Chr10:15671124..15671148 (25 bp)
TAGCATATAAACACCCTTACCCAAG
LOC_Os10g30719
Os.46487.1.S1_at--252--3111Chr10:15671162..15671186 (25 bp)
AATAGTTACTGGTTGTTCTAGCAGA
LOC_Os10g30719
Os.46487.1.S1_at--939--8091Chr10:15671248..15671272 (25 bp)
GGACCATCAGTAGATTTATCTCCTC
LOC_Os10g30719
Os.46487.1.S1_at--916--10151Chr10:15671264..15671288 (25 bp)
TATCTCCTCCTTAACTAGTAGCTAC
LOC_Os10g30719
Os.46487.1.S1_at--396--8691Chr10:15671308..15671332 (25 bp)
TGTCGTTTTGGTTACAATTTCCTCT
LOC_Os10g30719
Os.46487.1.S1_at--1024--3171Chr10:15671322..15671346 (25 bp)
CAATTTCCTCTCCACATTTGGGATT
LOC_Os10g30719
Target Sequence 
AACTATGCTTTGGAACCACTAGAGACAAAAGATGTCGTCTAAGAAAAAATAATGATCACTGGACAATCAAAGAAGTAAAA
AATTTGGTACAAGGTGTTTCCAAGCATGGGGTTGGACGATGGACAGAATTGAAGAGAGATTTTTTCTCCACATCCATTCG
AACTTCTGTCCATCTGAAGGATAAATGGAGGAACCTGTTGAAAGCATGTGGGATCGATTTCACCTCCACAGCAAAGGGAA
AAGCACAGAAGACAATGCTATGGCCCCTTGATAAACGATTGACTGAACAGATTATACAGTTAGCATATAAACACCCTTAC
CCAAGACAAAAGTACTAGAATAGTTACTGGTTGTTCTAGCAGAGAAAGCAACTGGTAGAAGAGTCAGAAGGTATCAGAGC
ATATAGTAGAGTTGATTTTAGTCAGGACCATCAGTAGATTTATCTCCTCCTTAACTAGTAGCTACTGAAATTTAAACGTT
TTTTTGTCGTTTTGGTTACAATTTCCTCTCCACATTTGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis