Browse Element(s) Details


Os.46490.1.S1_at

Description gb:AK071359.1
DB_XREF= gi:32981382
TID=Os.46490.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine-specific kinase like protein (OSJNBa0046P18.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089J23, full insert sequence.
FL= gb:AK071359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3054011/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g30570OsAffx.18466.1.S1_at11/1110+15570168..15573423Cytokinin-O-glucosyltransferase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46490.1.S1_at--756--1631Chr10:15550430..15550454 (25 bp)
AGCGTCGCCACCGTGTCTGACATTG
LOC_Os10g30540
Os.46490.1.S1_at--600--1771Chr10:15550439..15550463 (25 bp)
ACCGTGTCTGACATTGGACTCTCCG
LOC_Os10g30540
Os.46490.1.S1_at--1010--671Chr10:15550471..15550495 (25 bp)
ATGACGTAGGCCAGGTGTTCGACAT
LOC_Os10g30540
Os.46490.1.S1_at--968--871Chr10:15550478..15550502 (25 bp)
AGGCCAGGTGTTCGACATTAGGACT
LOC_Os10g30540
Os.46490.1.S1_at--500--10431Chr10:15550495..15550519 (25 bp)
TTAGGACTCCAGTTGATTAGGATCA
LOC_Os10g30540
Os.46490.1.S1_at--609--6551Chr10:15550509..15550533 (25 bp)
GATTAGGATCAACTTCACGTTGGTA
LOC_Os10g30540
Os.46490.1.S1_at--219--2511Chr10:15550519..15550543 (25 bp)
AACTTCACGTTGGTAGCACTAATTG
LOC_Os10g30540
Os.46490.1.S1_at--1147--1491Chr10:15550533..15550557 (25 bp)
AGCACTAATTGTAGACTGTGATTTG
LOC_Os10g30540
Os.46490.1.S1_at--704--3891Chr10:15550548..15550572 (25 bp)
CTGTGATTTGACTTTTTAGCTTGCA
LOC_Os10g30540
Os.46490.1.S1_at--1131--10711Chr10:15550555..15550579 (25 bp)
TTGACTTTTTAGCTTGCAATTAGCA
LOC_Os10g30540
Os.46490.1.S1_at--1130--5171Chr10:15550570..15550594 (25 bp)
GCAATTAGCAATTAGCAACAGATGT
LOC_Os10g30540
Target Sequence 
AGCGTCGCCACCGTGTCTGACATTGGACTCTCCGGCGGCAGATGACGTAGGCCAGGTGTTCGACATTAGGACTCCAGTTG
ATTAGGATCAACTTCACGTTGGTAGCACTAATTGTAGACTGTGATTTGACTTTTTAGCTTGCAATTAGCAATTAGCAACA
GATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis