Browse Element(s) Details


Os.46519.2.S1_x_at

Description gb:AK069152.1
DB_XREF= gi:32979176
TID=Os.46519.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gypsy-type retrotransposon RIRE2 (OSJNBa0049A03.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003O20, full insert sequence.
FL= gb:AK069152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g090302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09000Os.57315.1.S1_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S2_at11/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09000Os.19764.1.S1_at10/111+4511102..4517406Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os01g09010Os.4905.1.S1_a_at11/111+4525039..4529666Transferase family protein, expressed
LOC_Os01g09020Os.23033.1.S1_s_at11/111+4530843..4537018expressed protein
LOC_Os01g09020Os.46606.1.S1_x_at10/111+4530843..4537018expressed protein
LOC_Os01g09030Os.20153.1.S1_x_at11/111+4540675..4543348expressed protein
LOC_Os01g09030OsAffx.23168.1.S1_at11/111+4540675..4543348expressed protein
LOC_Os01g09030Os.46519.2.S1_x_at2/111+4540675..4543348expressed protein
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46519.2.S1_x_at--272--2751NONE
AAGAACCTCTGATACAATGTAGAGA
NONE
Os.46519.2.S1_x_at--919--5431NONE
GAACCTCTGATACAATGTAGAGAAA
NONE
Os.46519.2.S1_x_at--503--1691Chr10:13859843..13859867 (25 bp)
ACCAATGTTGGGAGGTTGATCTCTC
NONE
Os.46519.2.S1_x_at--884--3191Chr10:13859845..13859869 (25 bp)
CAATGTTGGGAGGTTGATCTCTCAT
NONE
Os.46519.2.S1_x_at--431--731Chr10:13859847..13859871 (25 bp)
ATGTTGGGAGGTTGATCTCTCATAT
NONE
Os.46519.2.S1_x_at--463--6631Chr10:13859849..13859873 (25 bp)
GTTGGGAGGTTGATCTCTCATATAT
NONE
Os.46519.2.S1_x_at--1127--8631Chr10:13859851..13859875 (25 bp)
TGGGAGGTTGATCTCTCATATATAT
NONE
Os.46519.2.S1_x_at--205--6173Chr10:13859854..13859878 (25 bp)
GAGGTTGATCTCTCATATATATAGC
NONE
Os.46519.2.S1_x_at--689--6651Chr10:13859857..13859881 (25 bp)
GTTGATCTCTCATATATATAGCTGA
NONE
Os.46519.2.S1_x_at--632--6414Chr10:13859860..13859884 (25 bp)
GATCTCTCATATATATAGCTGAATT
NONE
Os.46519.2.S1_x_at--993--351Chr10:13860006..13860030 (25 bp)
ATAATCCTAATAATAGTTGATCACT
NONE
Target Sequence 
AAGAACCTCTGATACAATGTAGAGAAAGTAGAATGGACGCCTCACCAATGTTGGGAGGTTGATCTCTCATATATATAGCT
GAATTACAATGAATGCTAGTGCTGAGATACAATCAATACAAGATAGTTACATAAGACCAAAGGTCTAGGGAGAGTAACTA
TTTGGGAGTGTAAAGGTCTAGGAGACCAACAGCCTATAGATTAATAATAATCCTAATAATAGTTGATCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46519.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis