Browse Element(s) Details

Os.46541.1.S1_at

Description

gb:AK066318.1
DB_XREF= gi:32976336
TID=Os.46541.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acylaminoacyl-peptidase like protein (OSJNBa0032I20.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067G13, full insert sequence.
FL= gb:AK066318.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g28030	9/11	prolyl oligopeptidase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g28020	Os.28089.1.S2_at	11/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	Os.56061.1.S1_at	11/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	Os.28089.1.S1_at	10/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.32313.1.S1_at	5/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.24407.1.S1_at	3/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.32313.1.S1_x_at	3/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	OsAffx.32245.1.A1_at	2/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28020	Os.26688.1.S2_s_at	1/11	10	+	14203446..14213741	prolyl oligopeptidase family protein, expressed
LOC_Os10g28030	Os.46541.2.S1_s_at	11/11	10	+	14215104..14219614	prolyl oligopeptidase family protein, expressed
LOC_Os10g28030	Os.46541.1.S1_at	9/11	10	+	14215104..14219614	prolyl oligopeptidase family protein, expressed
LOC_Os10g28030	OsAffx.11282.1.S1_at	1/11	10	+	14215104..14219614	prolyl oligopeptidase family protein, expressed
LOC_Os10g28040	Os.21782.2.S1_at	11/11	10	+	14219847..14226137	acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040	Os.21782.1.S1_at	11/11	10	+	14219847..14226137	acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040	Os.21782.1.S1_x_at	11/11	10	+	14219847..14226137	acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050	Os.3121.1.S1_at	11/11	10	+	14229567..14230776	Chitinase 2, putative, expressed
LOC_Os10g28060	Os.46477.1.S1_at	4/11	10	+	14231422..14236340	Fatty acid elongase, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46541.1.S1_at--475--371	1	Chr10:14219573..14219597 (25 bp)	CTAGCTACTGCTCTGACCGTGATTG	LOC_Os10g28030
Os.46541.1.S1_at--565--485	1	Chr10:14219576..14219600 (25 bp)	GCTACTGCTCTGACCGTGATTGATG	LOC_Os10g28030
Os.46541.1.S1_at--111--373	1	Chr10:14219577..14219601 (25 bp)	CTACTGCTCTGACCGTGATTGATGA	LOC_Os10g28030
Os.46541.1.S1_at--202--199	1	Chr10:14219579..14219603 (25 bp)	ACTGCTCTGACCGTGATTGATGATC	LOC_Os10g28030
Os.46541.1.S1_at--1013--383	1	Chr10:14219580..14219604 (25 bp)	CTGCTCTGACCGTGATTGATGATCA	LOC_Os10g28030
Os.46541.1.S1_at--1018--909	1	Chr10:14219581..14219605 (25 bp)	TGCTCTGACCGTGATTGATGATCAG	LOC_Os10g28030
Os.46541.1.S1_at--397--481	1	Chr10:14219582..14219606 (25 bp)	GCTCTGACCGTGATTGATGATCAGT	LOC_Os10g28030
Os.46541.1.S1_at--718--377	1	Chr10:14219583..14219606 (24 bp)	CTCTGACCGTGATTGATGATCAGTA	LOC_Os10g28030
Os.46541.1.S1_at--925--947	1	NONE	TCTGACCGTGATTGATGATCAGTAC	NONE
Os.46541.1.S1_at--583--893	1	NONE	TGACCGTGATTGATGATCAGTACAA	NONE
Os.46541.1.S1_at--724--581	1	Chr10:14219587..14219614 (25 bp)	GACCGTGATTGATGATCAGTACAAC	LOC_Os10g28030

Target Sequence

CTAGCTACTGCTCTGACCGTGATTGATGATCAGTACAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis