Browse Element(s) Details


Os.46541.2.S1_s_at

Description gb:AK061694.1
DB_XREF= gi:32971712
TID=Os.46541.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative acylaminoacyl-peptidase like protein (OSJNBa0032I20.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C07, full insert sequence.
FL= gb:AK061694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2803011/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28020Os.28089.1.S2_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.56061.1.S1_at11/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.28089.1.S1_at10/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_at5/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.24407.1.S1_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32313.1.S1_x_at3/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020OsAffx.32245.1.A1_at2/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28020Os.26688.1.S2_s_at1/1110+14203446..14213741prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.2.S1_s_at11/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030Os.46541.1.S1_at9/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28030OsAffx.11282.1.S1_at1/1110+14215104..14219614prolyl oligopeptidase family protein, expressed
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46541.2.S1_s_at--705--431Chr10:14218478..14218502 (25 bp)
ATCTTCGCCTCTTCTATCAGAAATC
LOC_Os10g28030
Os.46541.2.S1_s_at--267--191Chr10:14218516..14218717 (25 bp)
ATTTCGAAGGTGAAAGCGCCCCTGC
LOC_Os10g28030
Os.46541.2.S1_s_at--594--4531Chr10:14218710..14218734 (25 bp)
GCCCCTGCTTATGCTTCTTGGAGGA
LOC_Os10g28030
Os.46541.2.S1_s_at--124--8011Chr10:14218729..14218753 (25 bp)
GGAGGAGCAGATCTTCGAGTCCCCA
LOC_Os10g28030
Os.46541.2.S1_s_at--651--6071Chr10:14218745..14218769 (25 bp)
GAGTCCCCATTTCTAATGGCCTACA
LOC_Os10g28030
Os.46541.2.S1_s_at--1058--871Chr10:14218760..14219032 (25 bp)
ATGGCCTACAGTACGCAAGAGCTCT
LOC_Os10g28030
Os.46541.2.S1_s_at--583--7951Chr10:14219056..14219080 (25 bp)
GGATCATGATGTTCCCAGACGACAT
LOC_Os10g28030
Os.46541.2.S1_s_at--413--6011Chr10:14219266..14219290 (25 bp)
GAGAGCTTCCTCAACATTGGTGTCT
LOC_Os10g28030
Os.46541.2.S1_s_at--673--6331Chr10:14219323..14219347 (25 bp)
GATGCATCTGCATGAAGTCAACTTG
LOC_Os10g28030
Os.46541.2.S1_s_at--855--9931Chr10:14219367..14219391 (25 bp)
TACGTGGTTTAATCTAGTCCAACAG
LOC_Os10g28030
Os.46541.2.S1_s_at--117--10051Chr10:14219393..14219417 (25 bp)
TAGATGCCATTGTAAGCCTTGTTCA
LOC_Os10g28030
Target Sequence 
ATCTTCGCCTCTTCTATCAGAAATCACCAATTGCCCATATTTCGAAGGTGAAAGCGCCCCTGCTTATGCTTCTTGGAGGA
GCAGATCTTCGAGTCCCCATTTCTAATGGCCTACAGTACGCAAGAGCTCTGAGAGAAAGAGGCGGCGAGATCAGGATCAT
GATGTTCCCAGACGACATACATGAAATCAACATACCACAATCGGATTTTGAGAGCTTCCTCAACATTGGTGTCTGGTTCA
AGAAGCATCTTAGCATATCAGCATCAGATGCATCTGCATGAAGTCAACTTGAAGAAGGGGAGGAAGAAATTACGTGGTTT
AATCTAGTCCAACAGGTAGATGCCATTGTAAGCCTTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46541.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis