Browse Element(s) Details


Os.46610.1.A1_x_at

Description gb:NM_186946.1
DB_XREF= gi:34900977
GEN=P0046D03.9
TID=Os.46610.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0046D03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0046D03.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1570011/11hypothetical protein
LOC_Os07g291704/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g323804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g266003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g206303/11hypothetical protein
LOC_Os05g243903/11hypothetical protein
LOC_Os08g292303/11hypothetical protein
LOC_Os05g243603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g164002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g278342/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g104402/11hypothetical protein
LOC_Os06g301502/11transposon protein, putative, unclassified
LOC_Os04g380701/11retrotransposon protein, putative, unclassified
LOC_Os05g206201/11expressed protein
LOC_Os03g359501/11expressed protein
LOC_Os10g068601/11hypothetical protein
LOC_Os06g033501/11hypothetical protein
LOC_Os10g033101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g259601/11hypothetical protein
LOC_Os10g247101/11expressed protein
LOC_Os08g052201/11retrotransposon protein, putative, unclassified
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
LOC_Os09g031801/11transposon protein, putative, Mutator sub-class
LOC_Os07g252701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g064301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g077601/11retrotransposon protein, putative, unclassified
LOC_Os12g216001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15670Os.25507.1.S1_at10/117+9097402..9101211expressed protein
LOC_Os07g15680Os.5744.1.S1_at11/117+9103800..9111224Phospholipase D beta 1, putative, expressed
LOC_Os07g15690OsAffx.22421.3.S1_at11/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15690OsAffx.22421.2.S1_at2/117+9115421..9118253transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15700Os.46610.1.A1_x_at11/117+9123209..9123736hypothetical protein
LOC_Os07g15710Os.27435.1.S1_x_at3/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_x_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.22896.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.940.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15720NANA7+9135235..9135654hypothetical protein
LOC_Os07g15730OsAffx.28465.1.S1_at11/117+9135942..9136301hypothetical protein
LOC_Os07g15730OsAffx.16451.1.S1_x_at1/117+9135942..9136301hypothetical protein
LOC_Os07g15740OsAffx.22699.1.S1_x_at1/117+9136573..9140791retrotransposon protein, putative, unclassified
LOC_Os07g15750NANA7+9141074..9142072retrotransposon protein, putative, unclassified
LOC_Os07g15760OsAffx.3761.1.S1_x_at1/117+9142468..9145663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46610.1.A1_x_at--936--411118Chr12:4408277..4408301 (25 bp)
CGCAAGAAATCGATCCGGGAAATCA
NONE
Os.46610.1.A1_x_at--79--107920Chr11:9959473..9959497 (25 bp)
TTGATTCGGATAAGATACTCAACGA
NONE
Os.46610.1.A1_x_at--1120--64563Chr12:11949405..11949428 (24 bp)
GATACTCAACGATTTGCTCCGATTT
NONE
Os.46610.1.A1_x_at--1074--521125Chr12:14320362..14320386 (25 bp)
GAATATTTCCCCTCAACTAAATTGG
NONE
Os.46610.1.A1_x_at--151--2792Chr11:9959599..9959623 (25 bp)
AAGAGGCGGCGGCACAGGGCACAGC
NONE
Os.46610.1.A1_x_at--115--37937Chr12:14320457..14320481 (25 bp)
CTCGGCTCTGTCCAGAGCTGGAAGA
NONE
Os.46610.1.A1_x_at--936--34132Chr12:14320469..14320493 (25 bp)
CAGAGCTGGAAGATGAACAGTGCCA
NONE
Os.46610.1.A1_x_at--1067--91911Chr11:6167330..6167350 (21 bp)
TGCCAGGGAGGGAAAGTAGACTTTC
NONE
Os.46610.1.A1_x_at--969--1398Chr11:9959681..9959705 (25 bp)
AGACTTTCTGCTGGGCTTCTACTTC
NONE
Os.46610.1.A1_x_at--1093--7575Chr11:9959693..9959717 (25 bp)
GGGCTTCTACTTCCAAAGACTGATT
NONE
Os.46610.1.A1_x_at--857--55914Chr12:4408575..4408600 (25 bp)
GACTGATTAAAGGAGGGACAAAAGC
NONE
Target Sequence 
CGCAAGAAATCGATCCGGGAAATCAAAAACTCGGTTTTGGAGATAAACTCGAAAACGAGTTTGATTCGGATAAGATACTC
AACGATTTGCTCCGATTTTTGGGGGGTAAAGATAGAGGAGGATAAGAGGAATATTTCCCCTCAACTAAATTGGAAAAAGG
AGCAACGGGGAGGCGAGATTTGGAAGGAAGAGGCGGCGGCACAGGGCACAGCACGGGCGGCTCGGCTCTGTCCAGAGCTG
GAAGATGAACAGTGCCAGGGAGGGAAAGTAGACTTTCTGCTGGGCTTCTACTTCCAAAGACTGATTAAAGGAGGGACAAA
AGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46610.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis