Browse Element(s) Details


Os.46615.1.S1_at

Description gb:NM_197842.1
DB_XREF= gi:37537043
TID=Os.46615.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46615 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative GTPase domain containing protein (OSJNBa0095C07.33), mRNA.
PROD=putative GTPase domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42130Os.21932.1.S1_at11/1110+22339832..22342131no apical meristem, putative, expressed
LOC_Os10g42150Os.9540.2.S1_at11/1110+22344952..22346899transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42160Os.48027.1.S1_x_at11/1110+22347537..22349469transposon protein, putative, unclassified, expressed
LOC_Os10g42170Os.46615.1.S1_at11/1110+22350399..22352513expressed protein
LOC_Os10g42180Os.46883.1.S1_at11/1110+22352591..22355066Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os10g42190Os.11604.2.S1_at11/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.11604.1.S1_at10/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.49252.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42190Os.46673.1.S1_x_at1/1110+22361103..22365459Leucine Rich Repeat family protein, expressed
LOC_Os10g42196Os.23268.1.S1_at11/1110+22369432..22377421expressed protein
LOC_Os10g42196Os.23268.1.S2_at11/1110+22369432..22377421expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46615.1.S1_at--1100--4431Chr10:22351317..22351341 (25 bp)
GCCATTGTGAGCAGCCATCCAGGAG
LOC_Os10g42170
Os.46615.1.S1_at--120--7891Chr10:22351359..22351735 (25 bp)
GGTTACAAGGTTGCTAGTCATCCAA
LOC_Os10g42170
Os.46615.1.S1_at--932--1991Chr10:22351753..22351777 (25 bp)
ACTCCTGGTGTTTTGTCTCCTGTAT
LOC_Os10g42170
Os.46615.1.S1_at--295--9771Chr10:22351782..22351806 (25 bp)
TAATGACGAGTCTGGTCCTCTACTA
LOC_Os10g42170
Os.46615.1.S1_at--191--991Chr10:22351999..22352023 (25 bp)
AGGAGATATGCCTTCTTTCAGCCAT
LOC_Os10g42170
Os.46615.1.S1_at--199--2991Chr10:22352026..22352050 (25 bp)
AATGTCATCCAGCAGTCACCATAAT
LOC_Os10g42170
Os.46615.1.S1_at--917--4731Chr10:22352265..22352289 (25 bp)
GCTGTTCGCCAAGTGCTTTTTGATA
LOC_Os10g42170
Os.46615.1.S1_at--108--5271Chr10:22352346..22352370 (25 bp)
GAATGCCAGTTTATAGCCTTGCAGG
LOC_Os10g42170
Os.46615.1.S1_at--824--911Chr10:22352371..22352395 (25 bp)
AGGCTTTCAGGGTTTCTGCTGATCT
LOC_Os10g42170
Os.46615.1.S1_at--742--5591Chr10:22352426..22352450 (25 bp)
GAAATTACTCAACCTCTATCGAACA
LOC_Os10g42170
Os.46615.1.S1_at--511--5671Chr10:22352455..22352479 (25 bp)
GACTTGGCCGTTATACCTTAGACTG
LOC_Os10g42170
Target Sequence 
GCCATTGTGAGCAGCCATCCAGGAGAAACCAAGGACATAAGTGGTTACAAGGTTGCTAGTCATCCAAATATATATGTATT
AGACACTCCTGGTGTTTTGTCTCCTGTATTTTTTAATGACGAGTCTGGTCCTCTACTAGCTTTGACAGGAGCAATCAAGG
ATTCCATGATGCAGGAGTTTGAGATTGCCCAATTTCTGCTTGCAATTTTGAACTCAAGGGAGACATACAAGAAGTGGGAG
AACATGAATCAAGCAGGAGATATGCCTTCTTTCAGCCATGCAATGTCATCCAGCAGTCACCATAATAAAAGGCAATATGC
TTCAGATCATACCCAAGATTTTGTTGTGAAGGCTGTTCGCCAAGTGCTTTTTGATAGTATATCATCTTTTAAGGGGTATT
TAGAAAATGAGAATGAATTAAAGAGTTTGATAGAATGCCAGTTTATAGCCTTGCAGGAGGCTTTCAGGGTTTCTGCTGAT
CTAAGTGAGGATGTGCGTAAACTTGTTGCTATGAAATTACTCAACCTCTATCGAACAGGAAGACTTGGCCGTTATACCTT
AGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis