Browse Element(s) Details

Os.46622.1.S1_x_at

Description

gb:NM_197723.1
DB_XREF= gi:37536805
TID=Os.46622.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46622 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative sugar transporter (OSJNBa0042H09.26), mRNA.
PROD=putative sugar transporter
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g40950	11/11	Major myo-inositol transporter iolT, putative, expressed
LOC_Os12g32940	4/11	Sugar transporter family protein, expressed
LOC_Os08g07730	1/11	Transferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g40880	OsAffx.30741.1.S1_at	11/11	10	+	21639238..21640814	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40890	OsAffx.7914.1.S1_at	11/11	10	+	21642155..21647340	retrotransposon protein, putative, unclassified
LOC_Os10g40900	OsAffx.20137.1.S1_at	11/11	10	+	21649422..21652233	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40900	Os.13877.1.S1_at	1/11	10	+	21649422..21652233	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os10g40920	OsAffx.6932.1.S1_at	11/11	10	+	21654252..21657630	pentatricopeptide, putative, expressed
LOC_Os10g40934	Os.28435.4.S1_x_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.1.S1_a_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.5.S1_x_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.4.S1_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.28435.5.S1_at	11/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40934	Os.23290.2.S1_x_at	2/11	10	+	21658835..21664003	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40950	Os.46622.1.S1_x_at	11/11	10	+	21664458..21665479	Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40950	OsAffx.26978.1.S1_at	1/11	10	+	21664458..21665479	Major myo-inositol transporter iolT, putative, expressed
LOC_Os10g40960	Os.23290.2.S1_s_at	11/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.23290.2.S1_x_at	10/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.23290.1.S1_at	10/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.28435.5.S1_at	1/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40960	Os.28435.5.S1_x_at	1/11	10	+	21665876..21667896	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g40990	Os.52326.1.S1_at	11/11	10	+	21682883..21684635	Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990	Os.28435.5.S1_at	2/11	10	+	21682883..21684635	Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990	Os.8575.1.S1_at	1/11	10	+	21682883..21684635	Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g41000	Os.52220.1.S1_at	11/11	10	+	21685261..21689413	retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41000	Os.51877.1.S1_x_at	11/11	10	+	21685261..21689413	retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41020	Os.7510.1.S1_at	11/11	10	+	21690027..21693601	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020	Os.7510.1.S2_at	11/11	10	+	21690027..21693601	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020	Os.51877.1.S1_x_at	1/11	10	+	21690027..21693601	oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005886	cellular_component	plasma membrane
GO:0016020	cellular_component	membrane
GO:0005351	molecular_function	sugar porter activity
GO:0005354	molecular_function	galactose transporter activity
GO:0005355	molecular_function	glucose transporter activity
GO:0005365	molecular_function	myo-inositol transporter activity
GO:0005403	molecular_function	hydrogen:sugar symporter activity
GO:0015144	molecular_function	carbohydrate transporter activity
GO:0015145	molecular_function	monosaccharide transporter activity
GO:0015148	molecular_function	D-xylose transporter activity
GO:0015168	molecular_function	glycerol transporter activity
GO:0015575	molecular_function	mannitol transporter activity
GO:0015591	molecular_function	D-ribose transporter activity
GO:0016740	molecular_function	transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46622.1.S1_x_at--1017--603	4	Chr10:21664928..21664952 (25 bp)	GAGATCGAGGACGTCGTCGCCGCCA	LOC_Os10g40950
Os.46622.1.S1_x_at--853--105	2	Chr10:21664989..21665013 (25 bp)	AGGTGGCGACCAAGCCCGGCATGCA	LOC_Os10g40950
Os.46622.1.S1_x_at--570--827	1	Chr10:21665006..21665030 (25 bp)	GGCATGCAGCGGGTGCTCACCATCG	LOC_Os10g40950
Os.46622.1.S1_x_at--567--163	1	Chr10:21665013..21665037 (25 bp)	AGCGGGTGCTCACCATCGTGCTGAT	LOC_Os10g40950
Os.46622.1.S1_x_at--887--941	1	Chr10:21665028..21665052 (25 bp)	TCGTGCTGATGCTGCAGTTCTTCCA	LOC_Os10g40950
Os.46622.1.S1_x_at--950--121	1	Chr10:21665043..21665067 (25 bp)	AGTTCTTCCAGCAAGCCTCCGACAT	LOC_Os10g40950
Os.46622.1.S1_x_at--969--421	1	Chr10:21665061..21665085 (25 bp)	CCGACATCGACTCCGTGGTACTGTA	LOC_Os10g40950
Os.46622.1.S1_x_at--1156--51	1	Chr10:21665066..21665090 (25 bp)	ATCGACTCCGTGGTACTGTACGGCC	LOC_Os10g40950
Os.46622.1.S1_x_at--637--971	2	Chr10:21665142..21665166 (25 bp)	TCAACGTGGTGTTCGGCGTCGCCAA	LOC_Os10g40950
Os.46622.1.S1_x_at--704--363	1	Chr10:21665225..21665249 (25 bp)	CTTCTCGCCAGCACGGGCGGCATGA	LOC_Os10g40950
Os.46622.1.S1_x_at--1060--909	2	Chr10:21665265..21665289 (25 bp)	TGCTCGGCTCGGTGTTCGCCGCGTT	LOC_Os10g40950

Target Sequence

GAGATCGAGGACGTCGTCGCCGCCAGCTCCGTCGGCGGCAACGGCGGCGGTGCGCGGAAGGAGGTGGCGACCAAGCCCGG
CATGCAGCGGGTGCTCACCATCGTGCTGATGCTGCAGTTCTTCCAGCAAGCCTCCGACATCGACTCCGTGGTACTGTACG
GCCCGGGCGTGCTCGCCGCCGCCGGCGTGACGCCCAACACCCTCCTCCTGGGCCTCAACGTGGTGTTCGGCGTCGCCAAG
GCGAGCTCCATCCTCATCGCCATGGCGCTCACCGCCCGCGTGCGGCGCCGTCCTCTGCTTCTCGCCAGCACGGGCGGCAT
GACCGCCTCTCTCCTCGTGCTCGGCTCGGTGTTCGCCGCGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis