Browse Element(s) Details


Os.46633.1.A1_at

Description gb:CB673615
DB_XREF= gi:29677340
DB_XREF=OSJNEe08D15.r
CLONE=OSJNEe08D15
TID=Os.46633.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-carotene hydroxylase (OSJNBa0053C23.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3894011/11beta-carotene hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed
LOC_Os10g38954NANA10+20429918..20431210hypothetical protein
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016119biological_processcarotene metabolism
GO:0042411molecular_functionbeta-carotene hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46633.1.A1_at--898--8131Chr10:20416177..20416201 (25 bp)
GGACAAGTTCGAAGGCGTGCCCTAC
LOC_Os10g38940
Os.46633.1.A1_at--438--3871Chr10:20416205..20416490 (25 bp)
CTGTTCCTCGGACCCAAGGAGTTGG
LOC_Os10g38940
Os.46633.1.A1_at--294--4431Chr10:20416553..20416577 (25 bp)
GCCATGGACGCCATCAGATGAGAGC
LOC_Os10g38940
Os.46633.1.A1_at--865--1371Chr10:20416573..20416597 (25 bp)
AGAGCGAGAGTACTGCACATGCCAT
LOC_Os10g38940
Os.46633.1.A1_at--348--9031Chr10:20416586..20416610 (25 bp)
TGCACATGCCATGAGAGCTACTACT
LOC_Os10g38940
Os.46633.1.A1_at--363--6012Chr10:20416598..20416622 (25 bp)
GAGAGCTACTACTAGCCTGCTGCTA
LOC_Os10g38940
Os.46633.1.A1_at--1104--9371Chr10:20416629..20416653 (25 bp)
TCGATCGCTTTTGTTTTGGCTTTTC
LOC_Os10g38940
Os.46633.1.A1_at--576--10851Chr10:20416644..20416668 (25 bp)
TTGGCTTTTCCTGATTTTATGTTTA
LOC_Os10g38940
Os.46633.1.A1_at--612--6491Chr10:20416679..20416703 (25 bp)
GATAGCTGTCGGTGTATGTACTGTG
LOC_Os10g38940
Os.46633.1.A1_at--194--751Chr10:20416694..20416718 (25 bp)
ATGTACTGTGTAGAGTGCCGATACT
LOC_Os10g38940
Os.46633.1.A1_at--526--10031Chr10:20416704..20416728 (25 bp)
TAGAGTGCCGATACTTAATCTGTCC
LOC_Os10g38940
Target Sequence 
GGACAAGTTCGAAGGCGTGCCCTACGGCCTGTTCCTCGGACCCAAGGAGTTGGAGGAGGTGGGTGGGACTGAGGAGCTGG
ACAAGGAGATCAAGAAGAGGATCAAGAGGAAGGAGGCCATGGACGCCATCAGATGAGAGCGAGAGTACTGCACATGCCAT
GAGAGCTACTACTAGCCTGCTGCTACCATTTTCGATCGCTTTTGTTTTGGCTTTTCCTGATTTTATGTTTATTTTGATGT
AGATAGCTGTCGGTGTATGTACTGTGTAGAGTGCCGATACTTAATCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46633.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis