Browse Element(s) Details


Os.4665.1.S1_at

Description gb:AK069075.1
DB_XREF= gi:32979099
TID=Os.4665.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007K10, full insert sequence.
FL= gb:AY338235.1 gb:AK069075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1881011/11Aspartate aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18770Os.10841.1.S1_at11/113+10496193..10497392Wound-induced protein 1, putative, expressed
LOC_Os03g18790Os.51938.1.S1_at11/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18790Os.28438.2.S1_a_at1/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18800NANA3+10515709..10516044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009507cellular_componentchloroplast
GO:0004069molecular_functionaspartate transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4665.1.S1_at--665--7151Chr03:10524731..10524755 (25 bp)
GTCTACGGTGCCAAGAATGCTCCAT
LOC_Os03g18810
Os.4665.1.S1_at--482--3151Chr03:10524782..10524806 (25 bp)
AATTCTTGGGATGTCTTCGCCGAAA
LOC_Os03g18810
Os.4665.1.S1_at--161--5111Chr03:10524818..10524842 (25 bp)
GCACATGTGGTTACTACTCCTGGTA
LOC_Os03g18810
Os.4665.1.S1_at--348--4451Chr03:10524958..10524982 (25 bp)
GCCTTTATATTCTCAACCTCTTGGG
LOC_Os03g18810
Os.4665.1.S1_at--520--3271Chr03:10525019..10525043 (25 bp)
CAAAATTTACTCTGTCGGGCTATCA
LOC_Os03g18810
Os.4665.1.S1_at--991--10171Chr03:10525073..10525097 (25 bp)
TATAGGCAGTTGTTCTGTTCCGCTC
LOC_Os03g18810
Os.4665.1.S1_at--804--10651Chr03:10525090..10525114 (25 bp)
TTCCGCTCGGTATTTATCCATTCAG
LOC_Os03g18810
Os.4665.1.S1_at--202--9531Chr03:10525136..10525160 (25 bp)
TCTCTTGTTGTTTAGCCCTGATGCA
LOC_Os03g18810
Os.4665.1.S1_at--1020--2811Chr03:10525198..10525222 (25 bp)
AAGTTCGTTTCTACTACTCTGCTTA
LOC_Os03g18810
Os.4665.1.S1_at--284--9911Chr03:10525212..10525236 (25 bp)
TACTCTGCTTAATTTGCTGCTGCCG
LOC_Os03g18810
Os.4665.1.S1_at--325--9651Chr03:10525245..10525269 (25 bp)
TCAGTGATATCTCCCTGGATGCATT
LOC_Os03g18810
Target Sequence 
GTCTACGGTGCCAAGAATGCTCCATATGTGTGGGTGCACTTCCCTGGCCGTAATTCTTGGGATGTCTTCGCCGAAATTCT
TGAGAAGGCACATGTGGTTACTACTCCTGGTAGCGGATTTGGGCCCGGTGGTGAAGGCTTCGTAAGGGTCAGTGCATTTG
GGCACAGAGAGAACATTATTGAAGCTGCGAGAAGACTGAAGCAGCTGTACAAATGAGCAGTGATNCGGCCTTTATATTCT
CAACCTCTTGGGGAGCCATATCAAATAAAACCAAGCAGAGTTCGAAGACAAAATTTACTCTGTCGGGCTATCAGTAGATG
TTAGAATTGAAACCTAATACTTTATAGGCAGTTGTTCTGTTCCGCTCGGTATTTATCCATTCAGAGCCATTTTACATTCT
GAACTTCTCTTGTTGTTTAGCCCTGATGCACCNGAGTGAATCGCAAGCTTATTTATCTCCTTTTGCTAAGTTCGTTTCTA
CTACTCTGCTTAATTTGCTGCTGCCGTATAAGGCTCAGTGATATCTCCCTGGATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis