Browse Element(s) Details


Os.46654.1.S1_at

Description gb:CA764495
DB_XREF= gi:27546241
DB_XREF=AF53-Rpf_03_M20_T7_072.ab1
CLONE=C0001076
TID=Os.46654.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0041P03.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3521010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46654.1.S1_at--1009--6171Chr10:18481780..18481804 (25 bp)
GAGGAGACTAACATGTGGCTAAGAA
LOC_Os10g35210
Os.46654.1.S1_at--814--6471Chr10:18481807..18481831 (25 bp)
GATACATTCGATAAATTCCTAGATA
LOC_Os10g35210
Os.46654.1.S1_at--254--5271Chr10:18481839..18481863 (25 bp)
GAATGAGTTACAAGCCGAAGGAGAT
LOC_Os10g35210
Os.46654.1.S1_at--186--4231Chr10:18481853..18481877 (25 bp)
CCGAAGGAGATTAGGCGTAGGCCAT
LOC_Os10g35210
Os.46654.1.S1_at--381--251Chr10:18482005..18482027 (23 bp)
ATATGCAATCGATCATGTTATGGAT
LOC_Os10g35210
Os.46654.1.S1_at--202--1331Chr10:18482039..18482063 (25 bp)
AGAGGCACACATTGTTTGCTCCGGA
LOC_Os10g35210
Os.46654.1.S1_at--923--2071Chr10:18482047..18482071 (25 bp)
ACATTGTTTGCTCCGGAGGCTTAAA
LOC_Os10g35210
Os.46654.1.S1_at--134--9231Chr10:18482058..18482082 (25 bp)
TCCGGAGGCTTAAAGTTACCACATT
LOC_Os10g35210
Os.46654.1.S1_at--556--9871Chr10:18482255..18482279 (25 bp)
TACATGAAAGTTACCACATTGATCA
LOC_Os10g35210
Os.46654.1.S1_at--923--491Chr10:18482304..18482328 (25 bp)
ATCGGTGTGTAGGACTAGATCGTAA
LOC_Os10g35210
Os.46654.1.S1_at--129--951NONE
AGGACTAGATCGTAACTGGTTATAT
NONE
Target Sequence 
GAGGAGACTAACATGTGGCTAAGAAGGGATACATTCGATAAATTCCTAGATACTATGTTGAATGAGTTACAAGCCGAAGG
AGATTAGGCGTAGGCCATGATGAAGGATGAGAAATGAGACTAAAAGCCAGGGAAGAATATATATGCAATCGATCATGTTA
TGGATCAAGAAAAAGAGGCACACATTGTTTGCTCCGGAGGCTTAAAGTTACCACATTTTTTTGACGCAAGAAGGCTCTAC
CTTATAGTCATTTCATTGATAGAAATGAGGTTTATAGGTTACAAGTTTAAGGTTAGAGAGAAGAGAGACAGAGAGGGAGG
TACATAAAGGAAAGCAGAAAAGAAAGAGTAACGGGAAAAAGAAAGAGAATGTACAGGGGTATAGATATATACATGAAAGT
TACCACATTGATCAAGAGAGAAAAATATTGATCGNTAGATCGGTGTGTAGGACTAGATCGTAACTGGTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis