Browse Element(s) Details


Os.46662.2.S1_x_at

Description gb:NM_197056.1
DB_XREF= gi:37535471
TID=Os.46662.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46662 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0012L23.52), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3422011/11expressed protein
LOC_Os11g281042/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
LOC_Os10g34180Os.7424.2.S1_a_at11/1110+17911049..17913835Transcription factor BTF3, putative, expressed
LOC_Os10g34200Os.23628.1.A1_at10/1110+17915021..17917746expressed protein
LOC_Os10g34220Os.46662.2.S1_x_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.2.S1_s_at11/1110+17928520..17932946expressed protein
LOC_Os10g34220Os.46662.1.S1_at11/1110+17928520..17932946expressed protein
LOC_Os10g34230Os.46895.1.S1_at11/1110+17940722..17944919Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os10g34240OsAffx.18513.1.S1_at11/1110+17947169..17947957hypothetical protein
LOC_Os10g34260OsAffx.30146.1.S1_s_at11/1110+17952008..17952761hypothetical protein
LOC_Os10g34260OsAffx.30146.2.S1_x_at8/1110+17952008..17952761hypothetical protein
LOC_Os10g34270Os.46661.1.S1_s_at11/1110+17955861..17956823expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46662.2.S1_x_at--242--9571Chr10:17931637..17931661 (25 bp)
TCTTCTTGATGATGAGTTTCAGCCA
LOC_Os10g34220
Os.46662.2.S1_x_at--944--252Chr10:17931826..17931850 (25 bp)
ATATGCCATCCATGGGCAACTCTCT
LOC_Os10g34220
Os.46662.2.S1_x_at--822--3391Chr10:17931868..17931892 (25 bp)
CAGCTTTGGTGTTGTCGTTTTGGAA
LOC_Os10g34220
Os.46662.2.S1_x_at--1140--351Chr10:17932409..17932433 (25 bp)
ATAATACAGATAGCCCTTCTCTGCA
LOC_Os10g34220
Os.46662.2.S1_x_at--135--10591Chr10:17932425..17932449 (25 bp)
TTCTCTGCACTCAATCAGCTGTTGC
LOC_Os10g34220
Os.46662.2.S1_x_at--551--3191Chr10:17932436..17932460 (25 bp)
CAATCAGCTGTTGCTTCACGTCCAA
LOC_Os10g34220
Os.46662.2.S1_x_at--939--9651Chr10:17932451..17932475 (25 bp)
TCACGTCCAACGATGTCAGAGGTAG
LOC_Os10g34220
Os.46662.2.S1_x_at--32--6952Chr10:17932472..17932496 (25 bp)
GTAGTTGTGTTGTTGCTGACCAAAA
LOC_Os10g34220
Os.46662.2.S1_x_at--752--2431Chr10:17932494..17932518 (25 bp)
AAAATTCTTCAGAGTTCCAGCCCAC
LOC_Os10g34220
Os.46662.2.S1_x_at--150--1651Chr10:17932512..17932536 (25 bp)
AGCCCACTAGGCCTACTTTTATTGA
LOC_Os10g34220
Os.46662.2.S1_x_at--701--6991Chr10:17932550..17932574 (25 bp)
GTACGAGGTGAAACATCCTCCTCCA
LOC_Os10g34220
Target Sequence 
TCTTCTTGATGATGAGTTTCAGCCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCCTACCTGATGATCATAGTCATCTCA
GCACTAAATTTGCAGGAACATTGGGTTACACAGCTCCTGAATATGCCATCCATGGGCAACTCTCTGAGAAGGTTGACACA
TACAGCTTTGGTGTTGTCGTTTTGGAAATAATAAGTGGCAGGAAGCTCAATGATGCAAGGCTGGATCCTGATAGCCAGTA
CCTACTTGAATGGGCCTGGAAGCTTTATGAAAACAACAACTTGATTGAATTGGTGGATAAATCATTAGACCCAAAAGAAT
ATAATCCTGAAGAGGTGAAAAAAATAATACAGATAGCCCTTCTCTGCACTCAATCAGCTGTTGCTTCACGTCCAACGATG
TCAGAGGTAGTTGTGTTGTTGCTGACCAAAAATTCTTCAGAGTTCCAGCCCACTAGGCCTACTTTTATTGATGCAATAAG
TAGAGTACGAGGTGAAACATCCTCCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46662.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis