Browse Element(s) Details


Os.46712.1.S1_x_at

Description gb:CR280633
DB_XREF= gi:44667199
DB_XREF=CR280633
CLONE=y664c07p5
TID=Os.46712.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0009C07.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein
LOC_Os10g11034Os.10707.3.S1_x_at11/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_x_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10707.2.S1_at10/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.50043.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11034Os.10675.1.A1_at1/1110+5870557..5876316PAP/25A associated domain containing protein, expressed
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46712.1.S1_x_at--1135--4151Chr10:5880674..5880698 (25 bp)
CGCCGCTTCCCAATTTTCAAGATTA
LOC_Os10g11060
Os.46712.1.S1_x_at--905--10431Chr10:5880717..5880741 (25 bp)
TTAGAATCCCTAAATCCCAGCCGGG
LOC_Os10g11060
Os.46712.1.S1_x_at--378--1671Chr10:5880735..5880759 (25 bp)
AGCCGGGCTTCTGTTGATGTCTCTG
LOC_Os10g11060
Os.46712.1.S1_x_at--70--10771Chr10:5880748..5880868 (25 bp)
TTGATGTCTCTGGTATGAATACTGC
LOC_Os10g11060
Os.46712.1.S1_x_at--349--5111Chr10:5880867..5880891 (25 bp)
GCACAGCATGCAACCACAAGTTCAG
LOC_Os10g11060
Os.46712.1.S1_x_at--327--1531Chr10:5880898..5880922 (25 bp)
AGCAGGCTGCGGCACAAAATCCTCA
LOC_Os10g11060
Os.46712.1.S1_x_at--241--2451Chr10:5880913..5880937 (25 bp)
AAAATCCTCAAAATGCACCTAGCCC
LOC_Os10g11060
Os.46712.1.S1_x_at--1151--2251Chr10:5880941..5880965 (25 bp)
AAATAATGCCAACCATGACTCCAGC
LOC_Os10g11060
Os.46712.1.S1_x_at--475--1631Chr10:5880963..5880987 (25 bp)
AGCGGACTATCCCAGCAGCAAAGAC
LOC_Os10g11060
Os.46712.1.S1_x_at--287--7471Chr10:5881042..5881066 (25 bp)
GTGTGATGATCCTCCCCAAGGGAAG
LOC_Os10g11060
Os.46712.1.S1_x_at--909--5211Chr10:5881164..5881188 (25 bp)
GAATTATCTCAGGAGTTCCAGGGCA
LOC_Os10g11060
Target Sequence 
CGCCGCTTCCCAATTTTCAAGATTAGAGGAGCTAAAGAAGCGTTTAGAATCCCTAAATCCCAGCCGGGCTTCTGTTGATG
TCTCTGGTATGAATACTGCACAGCATGCAACCACAAGTTCAGTGCCTCAGCAGGCTGCGGCACAAAATCCTCAAAATGCA
CCTAGCCCTGCAAATAATGCCAACCATGACTCCAGCGGACTATCCCAGCAGCAAAGACCTGCCGNTGCAGAAAGGAAGAG
AAGACCATCACAAATGGGACGGGGGAGAGGGGGTGTGATGATCCTCCCCAAGGGAAGAGGAAGTTCAGGGTCAGGATGGA
CAGGTGCTGGGTTTGATGTANATNGCCGTACATGNTTCTANGGTTTGTAGTTACGTTTGAATTGTTGAAAATTAGAATTA
TCTCAGGAGTTCCAGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46712.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis