Browse Element(s) Details


Os.46713.1.A1_at

Description gb:NM_195207.1
DB_XREF= gi:37531773
TID=Os.46713.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46713 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0029P16.11), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g105407/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10520NANA10+5566285..5569075Zinc knuckle family protein
LOC_Os10g10530OsAffx.8412.1.S1_at11/1110+5583011..5583419hypothetical protein
LOC_Os10g10540Os.46713.1.A1_at7/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10540Os.56042.1.S1_at1/1110+5587299..5594221Protein kinase domain containing protein, expressed
LOC_Os10g10550OsAffx.18205.1.S1_at10/1110+5597449..5598286hypothetical protein
LOC_Os10g10550OsAffx.29033.1.S1_at1/1110+5597449..5598286hypothetical protein
LOC_Os10g10560OsAffx.18206.1.S1_x_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10560OsAffx.18206.1.S1_at11/1110+5599680..5600336pectinesterase inhibitor domain containing protein
LOC_Os10g10570OsAffx.30380.1.S1_at11/1110+5603848..5604574hypothetical protein
LOC_Os10g10580Os.12620.1.S1_at10/1110+5607752..5609629hypothetical protein
LOC_Os10g10580OsAffx.348.1.S1_at8/1110+5607752..5609629hypothetical protein
LOC_Os10g10590Os.45173.1.S1_x_at3/1110+5616230..5618587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10600NANA10+5618855..5623276retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46713.1.A1_at--508--2111Chr10:5593703..5593727 (25 bp)
ACATGGCGAATGGTCTCCAGTACCT
LOC_Os10g10540
Os.46713.1.A1_at--172--9031Chr10:5593727..5593751 (25 bp)
TGCACACCGCGCGTAACGAATGTGT
LOC_Os10g10540
Os.46713.1.A1_at--931--9791Chr10:5593740..5593764 (25 bp)
TAACGAATGTGTCCTGCATCGCGAC
LOC_Os10g10540
Os.46713.1.A1_at--1117--5771Chr10:5593789..5593813 (25 bp)
GACGAGAACCTCAGCTGCGCGAAGC
LOC_Os10g10540
Os.46713.1.A1_at--868--351Chr10:5593840..5593864 (25 bp)
ATCAACCATGACGAAGTGACCCCGG
LOC_Os10g10540
Os.46713.1.A1_at--914--1071Chr10:5594046..5594070 (25 bp)
AGTGGGTACAGGACTCGTTCCGCCA
LOC_Os10g10540
Os.46713.1.A1_at--818--3891Chr10:5594159..5594183 (25 bp)
CTGTGTGTGCTTCCGGAGCCTGACA
LOC_Os10g10540
Os.46713.1.A1_at--208--7291Chr10:5594236..5594260 (25 bp)
GTGCCTGCAGCAGAGCCATATCCTG
NONE
Os.46713.1.A1_at--1030--251Chr10:5594253..5594277 (25 bp)
ATATCCTGCAAGTCCAGCTAGCATT
NONE
Os.46713.1.A1_at--70--2231Chr10:5594288..5594312 (25 bp)
ACAAGTATGAATCGTCACCGGCCTC
NONE
Os.46713.1.A1_at--572--9051Chr10:5594315..5594339 (25 bp)
TGCTCGTTAGCTGAGACCTTAATGC
NONE
Target Sequence 
ACATGGCGAATGGTCTCCAGTACCTGCACACCGCGCGTAACGAATGTGTCCTGCATCGCGACATCAAGCCAAGCAACGTG
ATGCTCGACGAGAACCTCAGCTGCGCGAAGCTGTGCGACTTTGGGCTGGTGAAACAAATCAACCATGACGAAGTGACCCC
GGGCCGGCAGACAACCGTGATTGGTACACGGAGCNNTNTNGNCNNNNNNNGNNNNNGNNNGNNGNNNCATGGCCACAACA
ACAAGAACAGCCTCGTCGAGTGGGTACAGGACTCGTTCCGCCACAGGAAATCAGTCNCCGATATGGCAGACGAGAGGCTG
AAGGGTGATTTCGATGAGGAGCAGATTGAGCGGGTGATCCGGGTTGGGTTCCTGTGTGTGCTTCCGGAGCCTGACAAGCG
GCCGGACATGGCNNCGGTGGTNNGGACTACCTGAAAGGAAGGAGCGATGTGCCTGCAGCAGAGCCATATCCTGCAAGTCC
AGCTAGCATTCATGCTGCTAACAAGTATGAATCGTCACCGGCCTCTCTGCTCGTTAGCTGAGACCTTAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46713.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis