Browse Element(s) Details


Os.46726.1.S1_x_at

Description gb:NM_194798.1
DB_XREF= gi:37530955
TID=Os.46726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46726 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative alpha-mannosidase (OSJNBa0029P06.16), mRNA.
PROD=putative alpha-mannosidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0506911/11glycosyl hydrolase family 38 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05020Os.9427.1.S1_at11/1110+2438099..2439870Cytochrome P450 family protein, expressed
LOC_Os10g05030OsAffx.30286.1.S1_at11/1110+2442198..2442741hypothetical protein
LOC_Os10g05040Os.47463.1.S1_x_at6/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040Os.14491.2.S1_x_at4/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05040OsAffx.16187.1.S1_at1/1110+2444263..2448780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05050OsAffx.12510.1.S1_at11/1110+2455727..2456601hypothetical protein
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004559molecular_functionalpha-mannosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46726.1.S1_x_at--45--10131Chr10:2471680..2471704 (25 bp)
TATGAACTATCTGTCCTTGTGGATC
LOC_Os10g05069
Os.46726.1.S1_x_at--482--6431Chr10:2471701..2471725 (25 bp)
GATCATGCTGTTGGAGCTTCGAGTA
LOC_Os10g05069
Os.46726.1.S1_x_at--194--10751Chr10:2471741..2471760 (20 bp)
TTGAAGTTATGCTCCACAGGCGTCT
LOC_Os10g05069
Os.46726.1.S1_x_at--24--911Chr10:2472485..2472509 (25 bp)
AGGCGTCTTTCTGCAGACGATGGCA
LOC_Os10g05069
Os.46726.1.S1_x_at--19--291Chr10:2473082..2473106 (25 bp)
ATAGTCTTCCTGATAATGTTGCAAT
LOC_Os10g05069
Os.46726.1.S1_x_at--645--3191Chr10:2473103..2473213 (25 bp)
CAATCATCACCTTGCAGAGTCTTGA
LOC_Os10g05069
Os.46726.1.S1_x_at--63--1351Chr10:2473204..2473228 (25 bp)
AGAGTCTTGATGATGGCACCACACT
LOC_Os10g05069
Os.46726.1.S1_x_at--125--31Chr10:2473235..2473334 (25 bp)
ATTGGCGCATCTTTTTCAGGCTCAA
LOC_Os10g05069
Os.46726.1.S1_x_at--893--5971Chr10:2473547..2473571 (25 bp)
GAGACTAGCCTATCTGCAAACCAAA
LOC_Os10g05069
Os.46726.1.S1_x_at--498--5951Chr10:2473615..2473639 (25 bp)
GAGCAAAACTGATCCTGCACCATTG
LOC_Os10g05069
Os.46726.1.S1_x_at--3--1691Chr10:2473658..2473682 (25 bp)
AGCCACGCCCTTGTTGTTGAGCTTG
LOC_Os10g05069
Target Sequence 
TATGAACTATCTGTCCTTGTGGATCATGCTGTTGGAGCTTCGAGTATTCAAGATGGTCAGATTGAAGTTATGCTCCACAG
GCGTCTTTCTGCAGACGATGGCAGAGGAGTTGGGGAACCACTTAATGAAGTAGTATGTGTGGATCAAAAGTGCGATGGGC
TAGTGGACGAACGCAGTTGGAAATCCAACAATATTGCAAAAGCAAGTACGGTAGAAGGAAACTATAGTCTTCCTGATAAT
GTTGCAATCATCACCTTGCAGAGTCTTGATGATGGCACCACACTCCTTCGATTGGCGCATCTTTTTCAGGCTCAAGAGGA
CACACAATATTCAGTAATGGCAAAGGTTGAATTGAGAAAGCTGTTTGGAAAGAGGATAATCAAAGATTTGACTGAGACTA
GCCTATCTGCAAACCAAAAGAAGTCAGAGATGAAGAAGCTCAATTGGAGAGTAACCGGGGAGAGCAAAACTGATCCTGCA
CCATTGAAGGGTGGCCCAGTTGACAGCCACGCCCTTGTTGTTGAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46726.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis