Browse Element(s) Details


Os.46745.1.S1_at

Description gb:AK122065.1
DB_XREF= gi:37991711
TID=Os.46745.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.46745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115L18, full insert sequence.
FL= gb:AK122065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5771011/11signal peptide peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57670Os.5401.1.S1_at11/112+35314447..3531709650S ribosomal protein L9, chloroplast precursor, putative, expressed
LOC_Os02g57690Os.24122.1.A1_at10/112+35319744..35326049kelch repeat-containing protein, putative, expressed
LOC_Os02g57700OsAffx.3096.1.S1_s_at11/112+35328463..35334747U-box domain containing protein, expressed
LOC_Os02g57710Os.46745.1.S1_at11/112+35335865..35341494signal peptide peptidase family protein, expressed
LOC_Os02g57720Os.9222.1.S1_at11/112+35343804..35345571Aquaporin RWC3, putative, expressed
LOC_Os02g57730OsAffx.12682.1.S1_at11/112+35346072..35347837hypothetical protein
LOC_Os02g57740Os.8352.1.S1_at3/112+35349481..35351038hypothetical protein
LOC_Os02g57750Os.17210.1.S1_at11/112+35357005..35363032expressed protein
LOC_Os02g57760Os.54406.1.S1_at9/112+35364662..35367650O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46745.1.S1_at--38--7091Chr02:35340439..35340463 (25 bp)
GTCAATGGTTGCTTATGGTTCTGGT
LOC_Os02g57710
Os.46745.1.S1_at--441--831Chr02:35340453..35340887 (25 bp)
ATGGTTCTGGTCTTATGATCACGTA
LOC_Os02g57710
Os.46745.1.S1_at--291--6451Chr02:35340879..35340903 (25 bp)
GATCACGTATGTTGCCTTGAACCTT
LOC_Os02g57710
Os.46745.1.S1_at--826--8591Chr02:35340915..35340939 (25 bp)
TGGTCAACCAGCTCTTCTTTACATT
LOC_Os02g57710
Os.46745.1.S1_at--1023--10331Chr02:35340932..35340956 (25 bp)
TTTACATTGTGCCTTTTACGCTTGG
LOC_Os02g57710
Os.46745.1.S1_at--11--7771Chr02:35341075..35341099 (25 bp)
GGTGAACTCAGGAACCTCTGGACAA
LOC_Os02g57710
Os.46745.1.S1_at--723--1671Chr02:35341106..35341130 (25 bp)
AGCCTGAGAGAGTCTGCACGCACAT
LOC_Os02g57710
Os.46745.1.S1_at--210--2711Chr02:35341185..35341209 (25 bp)
AAGCTTATCAGCATGGCCTTGGAGT
LOC_Os02g57710
Os.46745.1.S1_at--763--8051Chr02:35341211..35341235 (25 bp)
GGAGAGGCTCACTGATACGTCTGAT
LOC_Os02g57710
Os.46745.1.S1_at--729--9331Chr02:35341290..35341314 (25 bp)
TCGCGACTCCACTGACTTGTAGTAA
LOC_Os02g57710
Os.46745.1.S1_at--540--1931Chr02:35341384..35341408 (25 bp)
ACGGATCCATGTTGTCATCACTAGC
LOC_Os02g57710
Target Sequence 
GTCAATGGTTGCTTATGGTTCTGGTCTTATGATCACGTATGTTGCCTTGAACCTTATGGATGGTCATGGTCAACCAGCTC
TTCTTTACATTGTGCCTTTTACGCTTGGCACCTTCATAGCGCTCGGCAGGAAACGGGGTGAACTCAGGAACCTCTGGACA
AGAGGACAGCCTGAGAGAGTCTGCACGCACATGCACATGCAACCTTNACCGAAGGACANCAATTGTGATGCTGTAAGCTC
GTAAGAAAGCTTATCAGCATGGCCTTGGAGTTGGAGAGGCTCACTGATACGTCTGATGTAAATTATATTTGCTCACGGTA
TTGTAACATAATATGTTCTCTGGAGGCAGAATCGCGACTCCACTGACTTGTAGTAACGTAGTACTACGTAGAAGTATTTG
TAACTAGGGCACTAGGCTTCANTGCTGTTGTCCTAGTATGGAACTACGGATCCATGTTGTCATCACTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis