Browse Element(s) Details


Os.46747.1.S1_at

Description gb:AK121948.1
DB_XREF= gi:37991571
TID=Os.46747.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107J04, full insert sequence.
FL= gb:AK121948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5777011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57740Os.9788.1.S1_x_at10/111+33719258..33722684expressed protein
LOC_Os01g57750OsAffx.21698.1.S1_at11/111+33723652..33724561hypothetical protein
LOC_Os01g57760OsAffx.21697.1.S1_at11/111+33731081..33732063retrotransposon protein, putative, unclassified
LOC_Os01g57770Os.6638.1.S1_x_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.46747.1.S1_at11/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.6638.1.S1_at9/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57770Os.55355.1.S1_x_at2/111+33736503..33742423hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g57780NANA1+33743993..33747210retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57790OsAffx.19069.1.S1_at2/111+33749911..33753571retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g57800OsAffx.7789.1.S1_x_at2/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.8279.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800Os.52731.1.S1_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57800OsAffx.31867.1.S1_x_at1/111+33755449..33762264retrotransposon protein, putative, unclassified
LOC_Os01g57810NANA1+33762717..33765923hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46747.1.S1_at--599--1791Chr01:33741769..33741793 (25 bp)
ACCGATGTCGATTTTTGGGACTGGT
LOC_Os01g57770
Os.46747.1.S1_at--869--10351Chr01:33741794..33741818 (25 bp)
TTTATAATAGAAACAAGCACGTGCA
LOC_Os01g57770
Os.46747.1.S1_at--63--1511Chr01:33741809..33741833 (25 bp)
AGCACGTGCAATTATTTCATTTCGA
LOC_Os01g57770
Os.46747.1.S1_at--548--10531Chr01:33741824..33741848 (25 bp)
TTCATTTCGACTTTTCGAGCCTGCA
LOC_Os01g57770
Os.46747.1.S1_at--852--5691Chr01:33741832..33741856 (25 bp)
GACTTTTCGAGCCTGCATAGCGTAT
LOC_Os01g57770
Os.46747.1.S1_at--634--9351Chr01:33741838..33741862 (25 bp)
TCGAGCCTGCATAGCGTATTAGCGT
LOC_Os01g57770
Os.46747.1.S1_at--125--4631Chr01:33741851..33741875 (25 bp)
GCGTATTAGCGTATACTGGATGACA
LOC_Os01g57770
Os.46747.1.S1_at--873--4631Chr01:33741859..33741883 (25 bp)
GCGTATACTGGATGACAAAACTAAT
LOC_Os01g57770
Os.46747.1.S1_at--1071--9691Chr01:33741880..33741904 (25 bp)
TAATCAATCGTTTTGTCCGGCTGCA
LOC_Os01g57770
Os.46747.1.S1_at--937--9731Chr01:33741883..33741907 (25 bp)
TCAATCGTTTTGTCCGGCTGCAGGA
LOC_Os01g57770
Os.46747.1.S1_at--347--4031Chr01:33741888..33741912 (25 bp)
CGTTTTGTCCGGCTGCAGGACGTCA
LOC_Os01g57770
Target Sequence 
ACCGATGTCGATTTTTGGGACTGGTTTTATAATAGAAACAAGCACGTGCAATTATTTCATTTCGACTTTTCGAGCCTGCA
TAGCGTATTAGCGTATACTGGATGACAAAACTAATCAATCGTTTTGTCCGGCTGCAGGACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis