Browse Element(s) Details


Os.46765.1.S1_x_at

Description gb:AK120138.1
DB_XREF= gi:37989761
TID=Os.46765.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027L14, full insert sequence.
FL= gb:AK120138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g575809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57540NANA3+32749194..32749616hypothetical protein
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein
LOC_Os03g57630OsAffx.25743.1.S1_at11/113+32788229..32788910hypothetical protein
LOC_Os03g57640Os.54936.1.S1_at11/113+32790378..32791699PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46765.1.S1_x_at--635--3191Chr03:32771069..32771093 (25 bp)
CAAGGTTAACACTGCCTCCATTTTA
LOC_Os03g57580
Os.46765.1.S1_x_at--766--9811Chr03:32769857..32769876 (20 bp)
TAACTCCGTGATTGGTGTACTGCTT
LOC_Os03g57580
Os.46765.1.S1_x_at--841--7431Chr03:32769843..32769867 (25 bp)
GTGTACTGCTTTAACCAATGCCTGC
LOC_Os03g57580
Os.46765.1.S1_x_at--969--591Chr03:32769826..32769850 (25 bp)
ATGCCTGCACATTCTGGAAGACCAT
LOC_Os03g57580
Os.46765.1.S1_x_at--238--6511Chr03:32769786..32769810 (25 bp)
GATATCGTACGCACAACTGAGTCAT
LOC_Os03g57580
Os.46765.1.S1_x_at--960--8891Chr03:32769769..32769793 (25 bp)
TGAGTCATCTCTGCTAGCTTGGTTC
LOC_Os03g57580
Os.46765.1.S1_x_at--29--2871NONE
AAGTGCACCTCTACTAGCTAGCGAT
NONE
Os.46765.1.S1_x_at--32--4391Chr03:32769555..32769579 (25 bp)
GCCACAGTGTCTATATACCAGTCCA
LOC_Os03g57580
Os.46765.1.S1_x_at--135--1731Chr06:21458662..21458811 (24 bp)
ACCAGTCCAATTGGTGCTTATATTG
NONE
Os.46765.1.S1_x_at--1008--191Chr03:32768873..32768897 (25 bp)
ATTTCCATTCGGTGCATTGATCTTC
LOC_Os03g57580
Os.46765.1.S1_x_at--110--7811Chr03:32768831..32768855 (25 bp)
GGTCTGCGTATGTTCTATTTTTCTT
LOC_Os03g57580
Target Sequence 
CAAGGTTAACACTGCCTCCATTTTACCNNTCTTACAGGTTTTGGGGTCTACCTTNCATGAATATAATGGCTACTATTGAA
ACCANAAATAACTCCGTGATTGGTGTACTGCTTTAACCAATGCCTGCACATTCTGGAAGACCATCGCCAAACCGATATCG
ATATCGTACGCACAACTGAGTCATCTCTGCTAGCTTGGTTCCAAGTGCACCTCTACTAGCTAGCGATGATGAGTTCGCTA
CATATTTCCGNTTTGTCTTCAAGGCGATCAATGCCACAGTGTCTATATACCAGTCCAATTGGTGCTTATATTGGCAATAT
TTCCATTCGGTGCATTGATCTTCAGTTCAAGATAAATAATGGTCTGCGTATGTTCTATTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46765.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis