Browse Element(s) Details


Os.46804.1.S1_at

Description gb:AK110827.1
DB_XREF= gi:32996036
TID=Os.46804.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cell cycle protein kinase (OSJNBa0027P10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H09, full insert sequence.
FL= gb:AK110827.1 gb:AK101930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4139011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed
LOC_Os10g41420NANA10+21932185..21932823expressed protein
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46804.1.S1_at--38--4291Chr10:21919712..21919736 (25 bp)
CCTCCTTACTATGGCAGTTGGCTTA
LOC_Os10g41390
Os.46804.1.S1_at--527--5931Chr10:21919761..21919785 (25 bp)
GAGCAGGATCTGAATCTTAGACCTA
LOC_Os10g41390
Os.46804.1.S1_at--298--5411Chr10:21919857..21919881 (25 bp)
GAAGCTCTACAATATTGCAGCCCAA
LOC_Os10g41390
Os.46804.1.S1_at--293--9071Chr10:21919883..21919907 (25 bp)
TGCTCAATACCCACAGAAGATCCTA
LOC_Os10g41390
Os.46804.1.S1_at--254--7511Chr10:21919912..21919936 (25 bp)
GTGGTCAGGACAGTGATGCTCTAGT
LOC_Os10g41390
Os.46804.1.S1_at--1074--2751Chr10:21919975..21919999 (25 bp)
AAGACATTACATTCCAGCCTCCTGA
LOC_Os10g41390
Os.46804.1.S1_at--535--5331Chr10:21920050..21920074 (25 bp)
GAAGTTTGTGTCAACCTTCTTCAAA
LOC_Os10g41390
Os.46804.1.S1_at--1036--5471Chr10:21920085..21920109 (25 bp)
GAACATGCAGTGTTGCCACTACAAG
LOC_Os10g41390
Os.46804.1.S1_at--513--2211Chr10:21920105..21920129 (25 bp)
ACAAGCCCCAACTTATGGTTGCATT
LOC_Os10g41390
Os.46804.1.S1_at--874--5971Chr10:21920136..21920160 (25 bp)
GAGAACTTGAACATTGCTGCTGAAA
LOC_Os10g41390
Os.46804.1.S1_at--811--8531Chr10:21920188..21920212 (25 bp)
TGGAGCCATCAACACAGAACGAAGT
LOC_Os10g41390
Target Sequence 
CCTCCTTACTATGGCAGTTGGCTTAGCTGTGGGAAAGAAAAATGGGATTGAGCAGGATCTGAATCTTAGACCTAGCAGTC
CTAGAAATTGTAGCACAAAGGCAACAGATGATATGGAAACGTTCGATGTGATTTCGAAAGAAGCTGAAGCTCTACAATAT
TGCAGCCCAAATGCTCAATACCCACAGAAGATCCTAACTTGTGGTCAGGACAGTGATGCTCTAGTAGTTAATGCTCATGT
GGCAATTCATGAGAATAAGATAGAAGACATTACATTCCAGCCTCCTGAAGGCACCAAAACAGAAGCTATTGTACATGAAA
TGGTCCATGAAACTATGGGAAGTTTGTGTCAACCTTCTTCAAACACAAAGGTTGAACATGCAGTGTTGCCACTACAAGCC
CCAACTTATGGTTGCATTAGCAATGAGAACTTGAACATTGCTGCTGAAAACAGAGCAAGCACACATCAAAATCATGTGGA
GCCATCAACACAGAACGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis