Browse Element(s) Details


Os.46809.1.S1_at

Description gb:AK110572.1
DB_XREF= gi:32995781
TID=Os.46809.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045B21.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D12, full insert sequence.
FL= gb:AK110572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2728011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27250NANA10+14038443..14043050hypothetical protein
LOC_Os10g27260Os.2741.4.S1_x_at11/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.47463.1.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.14491.2.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260OsAffx.8513.1.S1_s_at1/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27270NANA10+14063523..14063939hypothetical protein
LOC_Os10g27280Os.46809.1.S1_at11/1110+14067758..14069259Thaumatin family protein, expressed
LOC_Os10g27290OsAffx.31998.1.S1_at1/1110+14071807..14072277hypothetical protein
LOC_Os10g27300Os.49255.1.S1_at8/1110+14072931..14075635expressed protein
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46809.1.S1_at--545--1051Chr10:14068303..14068327 (25 bp)
AGGTGGACCTCCACGAGGACCAGAG
LOC_Os10g27280
Os.46809.1.S1_at--378--5831Chr10:14068298..14068322 (25 bp)
GACCTCCACGAGGACCAGAGCAAGG
LOC_Os10g27280
Os.46809.1.S1_at--657--9151Chr10:14068160..14068184 (25 bp)
TGCGCCAAGAACGTCAACGCGGTGT
LOC_Os10g27280
Os.46809.1.S1_at--569--6991Chr10:14067972..14067996 (25 bp)
GTACGTCAGCTACCCGTACGACACG
LOC_Os10g27280
Os.46809.1.S1_at--1142--6131Chr10:14067926..14067950 (25 bp)
GAGGTGTACGTGCTCACATTCTGTC
LOC_Os10g27280
Os.46809.1.S1_at--112--3751Chr10:14067914..14067938 (25 bp)
CTCACATTCTGTCCGTCCAGATGGG
LOC_Os10g27280
Os.46809.1.S1_at--362--7551Chr10:14067872..14067896 (25 bp)
GTGGCCCAGGCTTGACGGATATGAT
LOC_Os10g27280
Os.46809.1.S1_at--145--711Chr10:14067852..14067876 (25 bp)
ATGATGTGAGACGTATCGAGTAGAC
LOC_Os10g27280
Os.46809.1.S1_at--197--6091Chr10:14067835..14067859 (25 bp)
GAGTAGACGAGTAACACTCCGGCAT
LOC_Os10g27280
Os.46809.1.S1_at--532--1991Chr10:14067820..14067844 (25 bp)
ACTCCGGCATGCGTGTATCTAAGTA
LOC_Os10g27280
Os.46809.1.S1_at--1160--1891Chr10:14067759..14067783 (25 bp)
ACGTGTACTATTACGTATTTACATT
LOC_Os10g27280
Target Sequence 
AGGTGGACCTCCACGAGGACCAGAGCAAGGGGAGCTCCTACGACGTCAGCCTCGTCGACGGCTACAACCTGCCGGTGGCC
GTGTGGACGAAGCCCCCCACCCCCGGCGCCGCCGCCGCCGATCGCAAGTGCGTCATCCCCGGCTGCGCCAAGAACGTCAA
CGCGGTGTGCCCGCCGGAGCTGCAGGTGACGGCGGCGGCGGCGGTGGTGGCGTGCAAGAGCGCGTGCGTGGCGTTCGGGA
CGGACGCGTTCTGCTGCCGCGGCGCGCACGGCACGGCGGAGACGTGCCGCGGCAGCGCGTACTCGCGGGTGTTCCGGGAC
GCGTGCCCGGCGTACGTCAGCTACCCGTACGACACGGCGGCGGCGAGGTGCTACGCGGAGGTGTACGTGCTCACATTCTG
TCCGTCCAGATGGGGCGCGGGGGCAGATCGTGTGGCCCAGGCTTGACGGATATGATGTGAGACGTATCGAGTAGACGAGT
AACACTCCGGCATGCGTGTATCTAAGTAGGAGTAGTATGTACTATATACGGAGTATGTATTTATACGTGTACTATTACGT
ATTTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis