Browse Element(s) Details


Os.46810.2.S1_x_at

Description gb:NM_196709.1
DB_XREF= gi:37534777
TID=Os.46810.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015F09b.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015F09b.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g306209/11hypothetical protein
LOC_Os02g277501/11transposon protein, putative, Mutator sub-class
LOC_Os03g194521/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30580Os.10607.1.S1_at11/1110+15582075..15586577Cell division cycle protein 48 homolog, putative, expressed
LOC_Os10g30590Os.46315.3.S1_x_at11/1110+15588892..15590373pentatricopeptide, putative
LOC_Os10g30600Os.46674.1.S1_at10/1110+15591736..15594562Protein kinase domain containing protein, expressed
LOC_Os10g30610Os.27646.1.A1_at11/1110+15599403..15607334ABC transporter family protein, putative, expressed
LOC_Os10g30620Os.46810.2.S1_x_at9/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.2.S1_at8/1110+15609052..15613146hypothetical protein
LOC_Os10g30620Os.46810.1.S1_at4/1110+15609052..15613146hypothetical protein
LOC_Os10g30620OsAffx.3276.1.S1_at3/1110+15609052..15613146hypothetical protein
LOC_Os10g30630NANA10+15615504..15615896hypothetical protein
LOC_Os10g30640Os.22913.1.S1_at10/1110+15616867..15620695Translin family protein, expressed
LOC_Os10g30650NANA10+15625290..15628562transposon protein, putative, unclassified
LOC_Os10g30660NANA10+15629205..15635359retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46810.2.S1_x_at--761--9411Chr10:15610114..15610138 (25 bp)
TCGTCCAGGTGAAGGGCTCGCTGAA
LOC_Os10g30620
Os.46810.2.S1_x_at--45--2931Chr10:15609935..15609959 (25 bp)
AAGGACGGCGACGTGTACATCAACC
LOC_Os10g30620
Os.46810.2.S1_x_at--850--7432Chr03:10922545..10922569 (25 bp)
GTGTACATCAACCACATCATCGGGT
LOC_Os03g19452
Os.46810.2.S1_x_at--613--9411Chr10:15609904..15609928 (25 bp)
TCGGGTTCGGCCTCGGCAAGAAGAC
LOC_Os10g30620
Os.46810.2.S1_x_at--761--3231NONE
CAAGAAGACGCATTTCTGGCATGAT
NONE
Os.46810.2.S1_x_at--743--191NONE
ATTTCTGGCATGATGCTGGGACTTC
NONE
Os.46810.2.S1_x_at--1099--1692Chr10:15609313..15609337 (25 bp)
ACCACTGGACCATGCCGGGACATCG
LOC_Os10g30620
Os.46810.2.S1_x_at--835--3851Chr10:15609287..15609311 (25 bp)
CGGAGTACAGGTGGGCTTCCGCCTT
LOC_Os10g30620
Os.46810.2.S1_x_at--295--492Chr02:16432166..16432190 (25 bp)
ATCGGCCCCTCACAGCTGAGAGGCG
LOC_Os02g27750
Os.46810.2.S1_x_at--96--9531Chr10:15609156..15609180 (25 bp)
TCTACTCCGCCACCATATAGTCGTG
LOC_Os10g30620
Os.46810.2.S1_x_at--24--251Chr10:15609142..15609166 (25 bp)
ATATAGTCGTGCTACCCGTGCTGTG
LOC_Os10g30620
Target Sequence 
TCGTCCAGGTGAAGGGCTCGCTGAAGGCCGGCGACGGGCTGGCGCTGCTGTCTCCGGCGAGGCTGGTCGCCGCCGGCCTG
GTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGCCGTCACCGGCCGGCACGTCGGCCCGGCTCACCGGAT
CGGCTCGTCGGCGACGGTGAAGGACGGCGACGTGTACATCAACCACATCATCGGGTTCGGCCTCGGCAAGAAGACGCATT
TCTGGCATGATGCTGGGACTTCGTCACAGGCAGCAGGCACGTCGAGTCAGGGTCCACCACTGGACCATGCCGGGACATCG
TCGGAGTACAGGTGGGCTTCCGCCTTGCACTTCGACATCAGCGACTTCGACTTCCAGCACTCGACAGAGGACGTCATCGG
CCCCTCACAGCTGAGAGGCGCACCGCTGGTGCAGACGCAGGACCAGTCGCCCTCTACTCCGCCACCATATAGTCGTGCTA
CCCGTGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46810.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis