Browse Element(s) Details

Os.46826.1.S1_at

Description

gb:AK109295.1
DB_XREF= gi:32994504
TID=Os.46826.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative N-acetyltransferase (OSJNBa0078O01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D04, full insert sequence.
FL= gb:AK109295.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g35680	11/11	acetyltransferase, GNAT family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g35640	Os.46518.1.S1_at	11/11	10	+	18727281..18729777	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640	Os.46382.2.S1_x_at	1/11	10	+	18727281..18729777	Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650	Os.53725.1.S1_x_at	11/11	10	+	18737158..18738407	expressed protein
LOC_Os10g35650	Os.53725.1.S1_at	10/11	10	+	18737158..18738407	expressed protein
LOC_Os10g35650	Os.46649.1.S1_x_at	4/11	10	+	18737158..18738407	expressed protein
LOC_Os10g35650	Os.46382.2.S1_x_at	2/11	10	+	18737158..18738407	expressed protein
LOC_Os10g35650	OsAffx.14302.1.S1_at	1/11	10	+	18737158..18738407	expressed protein
LOC_Os10g35660	OsAffx.7993.1.S1_at	11/11	10	+	18741606..18743550	Myb-like DNA-binding domain containing protein
LOC_Os10g35660	OsAffx.7993.1.S1_x_at	11/11	10	+	18741606..18743550	Myb-like DNA-binding domain containing protein
LOC_Os10g35670	Os.16128.2.S1_at	11/11	10	+	18749054..18751998	RNA-binding protein, putative, expressed
LOC_Os10g35680	Os.46826.1.S1_x_at	11/11	10	+	18752888..18753633	acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680	Os.46826.1.S1_at	11/11	10	+	18752888..18753633	acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680	Os.46826.2.S1_at	1/11	10	+	18752888..18753633	acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690	Os.5981.1.S1_at	11/11	10	+	18754688..18758049	ribosomal protein S18 containing protein, expressed
LOC_Os10g35710	Os.10526.1.S1_a_at	11/11	10	+	18763069..18766056	expressed protein
LOC_Os10g35720	Os.11576.1.S1_a_at	11/11	10	+	18767214..18770999	glutaredoxin-related protein, expressed
LOC_Os10g35730	Os.15944.1.S1_a_at	11/11	10	+	18774478..18776095	expressed protein
LOC_Os10g35730	Os.15944.2.S1_x_at	11/11	10	+	18774478..18776095	expressed protein
LOC_Os10g35730	Os.25231.1.S1_x_at	4/11	10	+	18774478..18776095	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0008080	molecular_function	N-acetyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46826.1.S1_at--572--635	1	Chr10:18752970..18752994 (25 bp)	GATGCGTACCGGATGTACATGGATC	LOC_Os10g35680
Os.46826.1.S1_at--605--463	1	Chr10:18752967..18752991 (25 bp)	GCGTACCGGATGTACATGGATCTCT	LOC_Os10g35680
Os.46826.1.S1_at--191--699	1	Chr10:18752965..18752989 (25 bp)	GTACCGGATGTACATGGATCTCTAG	LOC_Os10g35680
Os.46826.1.S1_at--976--177	1	Chr10:18752963..18752987 (25 bp)	ACCGGATGTACATGGATCTCTAGGA	LOC_Os10g35680
Os.46826.1.S1_at--603--627	1	Chr10:18752959..18752983 (25 bp)	GATGTACATGGATCTCTAGGAAACC	LOC_Os10g35680
Os.46826.1.S1_at--877--701	1	Chr10:18752956..18752980 (25 bp)	GTACATGGATCTCTAGGAAACCAAA	LOC_Os10g35680
Os.46826.1.S1_at--395--795	1	Chr10:18752950..18752974 (25 bp)	GGATCTCTAGGAAACCAAACCAATC	LOC_Os10g35680
Os.46826.1.S1_at--787--369	1	Chr10:18752944..18752968 (25 bp)	CTAGGAAACCAAACCAATCAGCATT	LOC_Os10g35680
Os.46826.1.S1_at--351--815	1	Chr10:18752941..18752965 (25 bp)	GGAAACCAAACCAATCAGCATTTGA	LOC_Os10g35680
Os.46826.1.S1_at--57--237	1	Chr10:18752934..18752958 (25 bp)	AAACCAATCAGCATTTGAGCAAGAA	LOC_Os10g35680
Os.46826.1.S1_at--1150--437	1	Chr10:18752931..18752955 (25 bp)	CCAATCAGCATTTGAGCAAGAACAA	LOC_Os10g35680

Target Sequence

GATGCGTACCGGATGTACATGGATCTCTAGGAAACCAAACCAATCAGCATTTGAGCAAGAACAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis