Browse Element(s) Details


Os.46826.2.S1_at

Description gb:NM_197200.1
DB_XREF= gi:37535759
TID=Os.46826.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46826 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative N-acetyltransferase (OSJNBa0078O01.22), mRNA.
PROD=putative N-acetyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g356801/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46826.2.S1_at--571--6351Chr10:18752893..18752994 (25 bp)
GATGCGTACCGGATGAAATGCAAAT
LOC_Os10g35680
Os.46826.2.S1_at--1122--2291Chr10:18752872..18752896 (25 bp)
AAATGGAGCAATATGTTCTTCGCCA
NONE
Os.46826.2.S1_at--751--8791Chr10:18752859..18752883 (25 bp)
TGTTCTTCGCCAATTGTGATAGGGA
NONE
Os.46826.2.S1_at--771--9311Chr10:18752853..18752877 (25 bp)
TCGCCAATTGTGATAGGGAAATGCT
NONE
Os.46826.2.S1_at--950--5572Chr10:18752836..18752860 (25 bp)
GAAATGCTACGGGACGGTATCCTGT
NONE
Os.46826.2.S1_at--913--3711Chr10:18752829..18752853 (25 bp)
TACGGGACGGTATCCTGTTCGAACG
NONE
Os.46826.2.S1_at--63--4433Chr04:19609879..19609952 (25 bp)
GGACGGTATCCTGTTCGAACGGGAT
NONE
Os.46826.2.S1_at--646--6691Chr10:18752813..18752837 (25 bp)
GTTCGAACGGGATGCTATCTCTAAA
NONE
Os.46826.2.S1_at--715--6331Chr10:18752803..18752827 (25 bp)
GATGCTATCTCTAAAGATCGCCTGA
NONE
Os.46826.2.S1_at--852--9831Chr10:18752797..18752816 (20 bp)
TAAAGATCGCCTGATACCTGTTTCA
NONE
Os.46826.2.S1_at--387--1291Chr10:18752572..18752813 (25 bp)
AGATCGCCTGATACCTGTTTCAGCT
NONE
Target Sequence 
GATGCGTACCGGATGAAATGCAAATGGAGCAATATGTTCTTCGCCAATTGTGATAGGGAAATGCTACGGGACGGTATCCT
GTTCGAACGGGATGCTATCTCTAAAGATCGCCTGATACCTGTTTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46826.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis