Browse Element(s) Details


Os.46848.1.S1_at

Description gb:AK108031.1
DB_XREF= gi:32993240
TID=Os.46848.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0009C07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B05, full insert sequence.
FL= gb:AK108031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g109804/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10920OsAffx.22947.2.S1_x_at10/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.1.S1_x_at9/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.3.S1_x_at6/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.5.S1_x_at1/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10929NANA10+5813234..5813536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10938NANA10+5816540..5816764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40855.4.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40360.1.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10960NANA10+5826471..5826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10970Os.20602.2.S1_x_at11/1110+5831993..5834173hAT family dimerisation domain containing protein
LOC_Os10g10980Os.46848.2.S1_x_at11/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10980Os.46848.1.S1_at4/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46848.1.S1_at--435--971Chr10:5835591..5835615 (25 bp)
ACAAGACTCGTTCTAGTACCCCTGG
LOC_Os10g10980
Os.46848.1.S1_at--1025--3271Chr10:5835642..5835666 (25 bp)
CAAAGTGTTATTGGGACCGTCATCC
LOC_Os10g10980
Os.46848.1.S1_at--308--5831Chr10:5835656..5835680 (25 bp)
GACCGTCATCCTTCAGTTTGATTTG
LOC_Os10g10980
Os.46848.1.S1_at--273--311Chr10:5835690..5835714 (25 bp)
ATACCAGCCTAGATCGATGTGCTAC
LOC_Os10g10980
Os.46848.1.S1_at--681--7171Chr10:5836004..5836028 (25 bp)
GTCTGCAATTTAAGATTCTTCCCCA
NONE
Os.46848.1.S1_at--23--2671Chr10:5836028..5836052 (25 bp)
AAGCCCCGGGAGTAGGCATCTGTCA
NONE
Os.46848.1.S1_at--748--10091Chr10:5836040..5836064 (25 bp)
TAGGCATCTGTCATCCATTCACTAG
NONE
Os.46848.1.S1_at--1021--191Chr10:5836085..5836109 (25 bp)
ATTTGCCATGCCTTTTACACTGTAC
NONE
Os.46848.1.S1_at--655--8811Chr10:5836124..5836148 (25 bp)
TGTTGTTTTCGATTGCTGGTTGCTT
NONE
Os.46848.1.S1_at--129--6771Chr10:5836149..5836173 (25 bp)
GTTAATGCCTTATTTGCTCAGTGAC
NONE
Os.46848.1.S1_at--397--4831Chr10:5836164..5836188 (25 bp)
GCTCAGTGACATTTATTGTTCCTTT
NONE
Target Sequence 
ACAAGACTCGTTCTAGTACCCCTGGTTGGGAATTTTTTTTATTGCTTGTTCCAAAGTGTTATTGGGACCGTCATCCTTCA
GTTTGATTTGGATACACAAATACCAGCCTAGATCGATGTGCTACCAGAAATGCATGGCGATGGAGGTGACCAGATTGCAC
CAGCAGAGGATGGTGGGCTTCTCTTCCTTGCTGTGCGGGATTTTAGTCTCAATCTATGGAAGCATAAGATCAATAGTGAC
AGTGCTGCTGCTGGATGGGTGCTGGAGAAAACTATTGAACTGGACAGGCTCCTTCCTTTCGAACCAAGGCCTGATACTGA
TACACCGGCACCAATGAATATTCTGGGCTTTGCTGAGGAACATAATGTGGTATTTCTGGCAACAGCTATTGGTGTCTTCA
TGGTTAATCTGGAGTCTGCAATTTAAGATTCTTCCCCAAGCCCCGGGAGTAGGCATCTGTCATCCATTCACTAGTTTTTA
TACTAAAGGTAATTATTTGCCATGCCTTTTACACTGTACGTATAGAAAAATCATGTTGTTTTCGATTGCTGGTTGCTTGT
TAATGCCTTATTTGCTCAGTGACATTTATTGTTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis