Browse Element(s) Details


Os.46848.2.S1_x_at

Description gb:NM_195247.1
DB_XREF= gi:37531853
TID=Os.46848.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46848 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0009C07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0009C07.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1098011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10920OsAffx.22947.2.S1_x_at10/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.1.S1_x_at9/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.3.S1_x_at6/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.5.S1_x_at1/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10929NANA10+5813234..5813536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10938NANA10+5816540..5816764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40855.4.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40360.1.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10960NANA10+5826471..5826830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10970Os.20602.2.S1_x_at11/1110+5831993..5834173hAT family dimerisation domain containing protein
LOC_Os10g10980Os.46848.2.S1_x_at11/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10980Os.46848.1.S1_at4/1110+5834915..5836016F-box domain containing protein, expressed
LOC_Os10g10990Os.11679.1.S1_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g10990Os.11679.1.S2_a_at11/1110+5846058..5853917mutant TFIIF-alpha, putative, expressed
LOC_Os10g11012OsAffx.20652.1.S1_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.20652.1.S1_x_at11/1110+5859215..5863359hypothetical protein
LOC_Os10g11012OsAffx.24912.1.S1_at1/1110+5859215..5863359hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46848.2.S1_x_at--27--9951Chr10:5835311..5835335 (25 bp)
TACGACCGGAGCTTGTTGCAAATCA
LOC_Os10g10980
Os.46848.2.S1_x_at--1139--2251Chr10:5835330..5835354 (25 bp)
AAATCACGGTGTGGGATCCCGTCAC
LOC_Os10g10980
Os.46848.2.S1_x_at--649--6991Chr10:5835406..5835430 (25 bp)
GTACGTCTCCAACTGGGCGATGCGA
LOC_Os10g10980
Os.46848.2.S1_x_at--827--3811Chr10:5835463..5835487 (25 bp)
CTCCAGTCCCTTTGAGGTGGTGGTA
LOC_Os10g10980
Os.46848.2.S1_x_at--585--10371Chr10:5835516..5835540 (25 bp)
TTTTCACTTGCGTTTACTCATCCGA
LOC_Os10g10980
Os.46848.2.S1_x_at--278--9131Chr10:5835779..5835803 (25 bp)
TGCTGTGCGGGATTTTAGTCTCAAT
LOC_Os10g10980
Os.46848.2.S1_x_at--117--3111Chr10:5835822..5835846 (25 bp)
AATAGTGACAGTGCTGCTGCTGGAT
LOC_Os10g10980
Os.46848.2.S1_x_at--221--10211Chr10:5835863..5835887 (25 bp)
TATTGAACTGGACAGGCTCCTTCCT
LOC_Os10g10980
Os.46848.2.S1_x_at--644--8831Chr10:5835902..5835926 (25 bp)
TGATACTGATACACCGGCACCAATG
LOC_Os10g10980
Os.46848.2.S1_x_at--898--3111Chr10:5835927..5835951 (25 bp)
AATATTCTGGGCTTTGCTGAGGAAC
LOC_Os10g10980
Os.46848.2.S1_x_at--589--9751Chr10:5835953..5835977 (25 bp)
TAATGTGGTATTTCTGGCAACAGCT
LOC_Os10g10980
Target Sequence 
TACGACCGGAGCTTGTTGCAAATCACGGTGTGGGATCCCGTCACCGGCGACCGGCGCGCCGTTGATATCCCCGAGCCGTT
CGGTCGCCGGCCGGCGTACGTCTCCAACTGGGCGATGCGATGCGTGGATGGGCATGTGCACGGCGGCTGCCACTCCAGTC
CCTTTGAGGTGGTGGTAATAGGCTTCAATAAGTACCGGAGGCGGCTTTTCACTTGCGTTTACTCATCCGACACCGGCAAT
TGGGGCAAGATCGATGTGCTACCAGAAATGCATGGCGATGGAGGTGACCAGATTGCACCAGCAGAGGATGGTGGGCTTCT
CTTCCTTGCTGTGCGGGATTTTAGTCTCAATCTATGGAAGCATAAGATCAATAGTGACAGTGCTGCTGCTGGATGGGTGC
TGGAGAAAACTATTGAACTGGACAGGCTCCTTCCTTTCGAACCAAGGCCTGATACTGATACACCGGCACCAATGAATATT
CTGGGCTTTGCTGAGGAACATAATGTGGTATTTCTGGCAACAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46848.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis