Browse Element(s) Details


Os.46892.1.S1_at

Description gb:AK103472.1
DB_XREF= gi:32988681
TID=Os.46892.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein, 5-partial (OSJNBb0013L12.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130B05, full insert sequence.
FL= gb:AK103472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4307511/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46892.1.S1_at--563--9072Chr04:7906809..7906833 (25 bp)
TGCTATGTTAATCCACTCTTTCTCT
NONE
Os.46892.1.S1_at--1127--7932Chr04:7906835..7906859 (25 bp)
GGATTTCCATTCTAATTCGGAGTCT
NONE
Os.46892.1.S1_at--57--3872Chr04:7906912..7906936 (25 bp)
CTGAGGCGAAACATCTGCGTGCTAA
NONE
Os.46892.1.S1_at--345--1632Chr04:7906985..7907009 (25 bp)
AGCGGTCCTGGATTTACTCATGCAA
NONE
Os.46892.1.S1_at--91--4872Chr04:7907112..7907136 (25 bp)
GCTAGACACCTTGCTGATGCTGTAA
NONE
Os.46892.1.S1_at--1004--1712Chr04:7907152..7907176 (25 bp)
ACCAGGCTATGCTTTGTCACTTTAT
NONE
Os.46892.1.S1_at--451--5632Chr04:7907200..7907224 (25 bp)
GACACTCTCCTAACGAAATTCTCCT
NONE
Os.46892.1.S1_at--81--2252Chr04:7907215..7907239 (25 bp)
AAATTCTCCTCCAGAGCTTGTTGTT
NONE
Os.46892.1.S1_at--82--2572Chr04:7907255..7907279 (25 bp)
AACTGATCTATTTTGTCCACCAGAG
NONE
Os.46892.1.S1_at--192--8972Chr04:7907299..7907323 (25 bp)
TGAAATCCGCCGAAGATCTCAATGG
NONE
Os.46892.1.S1_at--927--752Chr04:7907333..7907357 (25 bp)
ATGTCTTTACAATTCCGTTAATGCA
NONE
Target Sequence 
TGCTATGTTAATCCACTCTTTCTCTTGGATTTCCATTCTAATTCGGAGTCTTTGGATGAAATTGAACGTATTCATGCAGA
ATTGATCCAAGGAAATTGTTTCTCTGAGGCGAAACATCTGCGTGCTAAAGATATTGATCTCATGAAAATTTATAATTTGG
AGAATAAACGAGATAAAGCGGTCCTGGATTTACTCATGCAAGCTGCAAGATATGATTTTGAATACCAGGGAAAGATACCT
GATGGGAAACCTTTTCCAGATGATGTTGAAGATGGCAAGCAATATATAGAAATTTCACCAGAGGCTAGACACCTTGCTGA
TGCTGTAACTTTGGTCAGAAAGAACCAGGCTATGCTTTGTCACTTTATCATGAAACAATTTGAAAGGAAAGGACACTCTC
CTAACGAAATTCTCCTCCAGAGCTTGTTGTTCTTGTTGCACTCAGCAACTGATCTATTTTGTCCACCAGAGAATGTGATC
GATATCATATTGAAATCCGCCGAAGATCTCAATGGAAAACTTGTATGTCTTTACAATTCCGTTAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis