Browse Element(s) Details


Os.46937.1.S1_at

Description gb:AK102486.1
DB_XREF= gi:32987695
TID=Os.46937.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094M07, full insert sequence.
FL= gb:AK102486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01960OsAffx.14495.1.S1_x_at11/115+526294..526805expressed protein
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46937.1.S1_at--881--2311Chr05:548563..548587 (25 bp)
AAAGGTTCCAGGCTGAGGCTGCTAC
LOC_Os05g02000
Os.46937.1.S1_at--33--8031Chr05:548032..548056 (25 bp)
GGAGGTCTTCTCATGAGTTCAGTTG
LOC_Os05g02000
Os.46937.1.S1_at--48--10511Chr05:548015..548039 (25 bp)
TTCAGTTGTTTGTCCAGATGCTTCC
LOC_Os05g02000
Os.46937.1.S1_at--34--1311Chr05:548000..548024 (25 bp)
AGATGCTTCCTCTATACCAGTTTCA
LOC_Os05g02000
Os.46937.1.S1_at--620--6831Chr05:547981..548005 (25 bp)
GTTTCACCTCCAATGTTAATGCCAC
LOC_Os05g02000
Os.46937.1.S1_at--653--9751Chr05:547965..547989 (25 bp)
TAATGCCACTTGACTCTAGAACTGA
LOC_Os05g02000
Os.46937.1.S1_at--860--2431Chr05:547882..547906 (25 bp)
AAAAGAGGAGCTGCTGCCCTATCAG
LOC_Os05g02000
Os.46937.1.S1_at--466--7891Chr05:547846..547870 (25 bp)
GGTTCTGCGGTATCTATTGTGCGGC
LOC_Os05g02000
Os.46937.1.S1_at--783--7091Chr05:547001..547025 (25 bp)
GTCAGGGAACTCATTGCCGGTTGTA
LOC_Os05g02000
Os.46937.1.S1_at--798--7411Chr05:546929..546953 (25 bp)
GTGTTAGTACTTCCCTTATCAAATG
LOC_Os05g02000
Os.46937.1.S1_at--1149--5011Chr05:546887..546911 (25 bp)
GCAGTGATCTCATGGTGTACTTCTA
LOC_Os05g02000
Target Sequence 
AAAGGTTCCAGGCTGAGGCTGCTACTGTGAATGGAGGTCTTCTCATGAGTTCAGTTGTTTGTCCAGATGCTTCCTCTATA
CCAGTTTCACCTCCAATGTTAATGCCACTTGACTCTAGAACTGAAAATGTTCTTGATAAGAGTCTTTCTCAGAGTAAGAA
CAAGGGGCGGAATCTACCTTCTAAAAGAGGAGCTGCTGCCCTATCAGCAGCATCTCCTGGTTCTGCGGTATCTATTGTGC
GGCGCTCCCCACATTTTGTGGGAATCAGGTGAGTTGTCAGCTGAGGCAATTTGTTGTCACCTGAGCAGACTGGCTCTTTA
ACTGATCAAGCATTGTAGATCCAAGAAAGTAACTAAAGTAATATCTTCAAATAATTCATCAACTGTCAGGGAACTCATTG
CCGGTTGTATGTATGATTCAAATTATCTTGTCAGATCTTGTACTTGATGGCGTTGTGTGTTAGTACTTCCCTTATCAAAT
GAATCGCTTGTTTAGCGAGCAGTGATCTCATGGTGTACTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis