Browse Element(s) Details


Os.46949.1.A1_at

Description gb:AK067956.1
DB_XREF= gi:32977974
TID=Os.46949.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127B03, full insert sequence.
FL= gb:AK067956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g084006/11guanylate-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08360OsAffx.28342.1.S1_at11/117+4286616..4287418expressed protein
LOC_Os07g08370NANA7+4297292..4297936hypothetical protein
LOC_Os07g08380OsAffx.16155.1.S1_at11/117+4303154..4303414expressed protein
LOC_Os07g08390Os.53396.1.S1_at11/117+4303920..4305813uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os07g08400Os.46949.1.A1_at6/117+4311094..4317484guanylate-binding family protein, putative, expressed
LOC_Os07g08410Os.7076.1.S1_at3/117+4317380..4318468expressed protein
LOC_Os07g08420Os.1501.1.S1_at11/117+4320535..4324972bZIP transcription factor family protein, expressed
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46949.1.A1_at--82--2751Chr07:4316869..4316893 (25 bp)
AAGAAGCTTCTCTTGCAATCCAAGA
LOC_Os07g08400
Os.46949.1.A1_at--142--5231Chr07:4316897..4316921 (25 bp)
GAATATTTAGGCTCAGCTCACGGCT
LOC_Os07g08400
Os.46949.1.A1_at--360--1571Chr07:4316911..4316935 (25 bp)
AGCTCACGGCTCTTAGTCTTACTGA
LOC_Os07g08400
Os.46949.1.A1_at--690--10471Chr07:4316929..4316953 (25 bp)
TTACTGACCCACCAAGCAAAGCAAA
LOC_Os07g08400
Os.46949.1.A1_at--546--8971Chr07:4317193..4317217 (25 bp)
TGAAGCTACTACTGTGTTTCTTACA
LOC_Os07g08400
Os.46949.1.A1_at--141--5151NONE
GCAACAAGATCATACCAGTCACATA
NONE
Os.46949.1.A1_at--315--3391NONE
CAGCTGGGCCTTCACTTTTTCTTGA
NONE
Os.46949.1.A1_at--1065--10751Chr07:4317311..4317333 (23 bp)
TTGAGCTTCCTCTTGGACTCACGGG
LOC_Os07g08400
Os.46949.1.A1_at--535--5711NONE
GACTCACGGGTTCCGTCACAAATAG
NONE
Os.46949.1.A1_at--858--4291NONE
CCTCTTTTCGAGCTATCTTTGCGAG
NONE
Os.46949.1.A1_at--417--9551NONE
TCTTTGCGAGCCCTTTTCACAAAAG
NONE
Target Sequence 
AAGAAGCTTCTCTTGCAATCCAAGAAGGGAATATTTAGGCTCAGCTCACGGCTCTTAGTCTTACTGACCCACCAAGCAAA
GCAAACGCTAACGTATGAATGATAATCAATCTTTGTTCTATATCGAAATGCTTATAGTAACAAAGAAATNTAACCATACT
TTATTTCAATGTAAAGATCATTCTTTGTATATTATGGCACACTAGATAATAACAAAGAAGATCTGGTAGTGTACAGGCCA
GAGCAGCNGAAATTTCATGAACCATCAGAAGAAACCGGTCTCTAAATTTCATGAATCACCAGGGGAACAGAACGAAGTTA
TTGATGAAGCTACTACTGTGTTTCTTACAGATTTTACATAAGTTGGGGTTTATTTCAAAATCTTACAGCAACAAGATCAT
ACCAGTCACATATTGATAAAAACAGNCAGCTGGGCCTTCACTTTTTCTTGAGCTTCCTCTTGGACTCACGGGTTCCGTCA
CAAATAGCGGGAAGTCCCAAAGTGGATCATGGGTCCCATGNATTTATTGGTNGTTGGTGCCCTCTTTTCGAGCTATCTTT
GCGAGCCCTTTTCACAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46949.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis