Browse Element(s) Details


Os.46958.1.S1_at

Description gb:AK064119.1
DB_XREF= gi:32974137
TID=Os.46958.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B10, full insert sequence.
FL= gb:AK064119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g459205/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45890OsAffx.26476.2.S1_x_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.2.S1_at11/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.1.S1_x_at6/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45890OsAffx.26476.3.S1_at2/114+26953029..26954571Zinc knuckle family protein
LOC_Os04g45900Os.10024.1.S1_at11/114+26964888..26968660transposon protein, putative, unclassified, expressed
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46958.1.S1_at--433--3131Chr04:26975657..26975681 (25 bp)
AATTACAGGACTTTGTGACTACAAC
LOC_Os04g45920
Os.46958.1.S1_at--380--8131Chr04:26975650..26975674 (25 bp)
GGACTTTGTGACTACAACTTGTACA
LOC_Os04g45920
Os.46958.1.S1_at--244--5711Chr04:26975641..26975665 (25 bp)
GACTACAACTTGTACAGCATGGTTA
LOC_Os04g45920
Os.46958.1.S1_at--241--2511Chr04:26975635..26975659 (25 bp)
AACTTGTACAGCATGGTTAATCCAA
LOC_Os04g45920
Os.46958.1.S1_at--1160--10371Chr04:26975601..26975625 (25 bp)
TTTTCAGTAGAGACATTGTGACAAC
LOC_Os04g45920
Os.46958.1.S1_at--604--6531NONE
GATTTCCGAACACCGTGCCACTCAA
NONE
Os.46958.1.S1_at--1090--3351NONE
CACCGTGCCACTCAAACTGAATACT
NONE
Os.46958.1.S1_at--526--9011NONE
TGAATACTCAATACCTGTGTCTCTG
NONE
Os.46958.1.S1_at--952--3091NONE
AATACCTGTGTCTCTGAATCACGGG
NONE
Os.46958.1.S1_at--16--7451NONE
GTGTCTCTGAATCACGGGAATCCCC
NONE
Os.46958.1.S1_at--1003--4331NONE
CCAGCGTCCTGGGAAATTTGAACCG
NONE
Target Sequence 
AATTACAGGACTTTGTGACTACAACTTGTACAGCATGGTTAATCCAAATAATACAATTTTCAGTAGAGACATTGTGACAA
CAAATTGAACAATGTGGTTCTTNTGTGTAAACGACCAAATCGAACANNACACTAANTAANTTCNTGNAAACTGNAAGCNT
GANGGAATCNNATNCACGCAGNANCNAGGCATNGAACNAANTTCAGTTATCTGNNANTGGNAAATGCTGANCCCAANTTT
GNCTGTNTCCCNATTCNGGNANCNACTTGGANTGTTNACNCCGNACGGGGCCAATCTCNAACGCNGGNTANTCTTCCCCN
TCNCANANAGANNAGCCNGAGNGTGTNGAGTGCAACCTCNAAACTCAGGGCTGANACCNANNNNAGNGNNNGATACCGAT
TTCCGAACACCGTGCCACTCAAACTGAATACTCAATACCTGTGTCTCTGAATCACGGGAATCCCCCAGCGTCCTGGGAAA
TTTGAACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis