Browse Element(s) Details

Os.4697.1.S1_at

Description

gb:D45218.1
DB_XREF= gi:639685
TID=Os.4697.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4697 (NCBI UniGene Cluster)
DEF=Rice mRNA for phosphoglucose isomerase (Pgi-b), complete cds.
PROD=phosphoglucose isomerase (Pgi-b)
FL= gb:AK068236.1 gb:D45218.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14510	11/11	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14460	Os.24295.1.A1_at	10/11	6	+	8126438..8128338	chromosome condensation family protein, putative, expressed
LOC_Os06g14470	Os.10007.2.S1_a_at	11/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14470	Os.10007.1.A1_a_at	11/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14470	Os.15454.1.S1_x_at	1/11	6	+	8128424..8133454	DIP2 protein, putative, expressed
LOC_Os06g14480	Os.47130.4.A1_x_at	2/11	6	+	8139997..8140254	retrotransposon protein, putative, unclassified
LOC_Os06g14490	Os.54493.1.S1_at	11/11	6	+	8141729..8146086	calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14490	Os.57121.1.S1_at	1/11	6	+	8141729..8146086	calmodulin-binding heat-shock protein, putative, expressed
LOC_Os06g14500	OsAffx.27635.1.S1_at	10/11	6	+	8146960..8148150	hypothetical protein
LOC_Os06g14500	Os.6094.1.S1_at	1/11	6	+	8146960..8148150	hypothetical protein
LOC_Os06g14510	Os.4697.1.S1_at	11/11	6	+	8151445..8158386	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510	Os.57457.1.S1_x_at	2/11	6	+	8151445..8158386	Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14520	NA	NA	6	+	8162528..8162758	hypothetical protein
LOC_Os06g14530	Os.12298.1.S1_at	11/11	6	+	8175720..8176754	expressed protein
LOC_Os06g14530	OsAffx.27637.1.S1_at	1/11	6	+	8175720..8176754	expressed protein
LOC_Os06g14540	Os.51106.1.S1_at	11/11	6	+	8177992..8183623	Endoglucanase 1 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005982	biological_process	starch metabolism
GO:0006094	biological_process	gluconeogenesis
GO:0006096	biological_process	glycolysis
GO:0009911	biological_process	positive regulation of flower development
GO:0009536	cellular_component	plastid
GO:0004347	molecular_function	glucose-6-phosphate isomerase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4697.1.S1_at--748--751	1	Chr06:8157653..8157849 (25 bp)	GTGGAACTGGGAAAGTCTCTGGCTT	LOC_Os06g14510
Os.4697.1.S1_at--658--557	1	Chr06:8157837..8157859 (23 bp)	GAAAGTCTCTGGCTTCTCAAGTGAG	LOC_Os06g14510
Os.4697.1.S1_at--845--377	1	Chr06:8157865..8157889 (25 bp)	CTCTGCATGCATCCCGCATGGAAGG	LOC_Os06g14510
Os.4697.1.S1_at--399--767	1	Chr06:8157903..8157927 (25 bp)	GGGTTCAACAGCAGCACTGCAAGTT	LOC_Os06g14510
Os.4697.1.S1_at--1071--217	1	Chr06:8158082..8158106 (25 bp)	ACACTACAACAATGCCGAAAGTTTA	LOC_Os06g14510
Os.4697.1.S1_at--52--311	1	Chr06:8158106..8158130 (25 bp)	AATATGATGTGTTTGGCACGCTATT	LOC_Os06g14510
Os.4697.1.S1_at--27--825	1	Chr06:8158120..8158144 (25 bp)	GGCACGCTATTTTCTTTGAGTTAAA	LOC_Os06g14510
Os.4697.1.S1_at--238--607	1	Chr06:8158137..8158161 (25 bp)	GAGTTAAACAAGGTTGAGCCGGCAT	LOC_Os06g14510
Os.4697.1.S1_at--1046--665	1	Chr06:8158149..8158173 (25 bp)	GTTGAGCCGGCATATTCTGTAATAA	LOC_Os06g14510
Os.4697.1.S1_at--859--985	1	Chr06:8158209..8158233 (25 bp)	TACAGCCCGTTTTACAGTACCATAG	LOC_Os06g14510
Os.4697.1.S1_at--254--955	1	Chr06:8158248..8158272 (25 bp)	TCTTTTTATTTACTCCGACTTCCAG	LOC_Os06g14510

Target Sequence

GTGGAACTGGGAAAGTCTCTGGCTTCTCAAGTGAGAAAATCTCTGCATGCATCCCGCATGGAAGGAAAGCCTGTCCAGGG
GTTCAACAGCAGCACTGCAAGTTTGCTGACACGATATCTCGCTGTTGAGCCATCCACTCCTTACAACACTACAACAATGC
CGAAAGTTTAATATGATGTGTTTGGCACGCTATTTTCTTTGAGTTAAACAAGGTTGAGCCGGCATATTCTGTAATAAGTT
TATTTATGTTCCTTTTGAAGTTGTTACAGGCTTACAGCCCGTTTTACAGTACCATAGTTTTGTTGTTTTTTTCTTTTTAT
TTACTCCGACTTCCAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis