Browse Element(s) Details


Os.46999.1.S1_at

Description gb:NM_197876.1
DB_XREF= gi:37537111
TID=Os.46999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0027L23.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0027L23.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4252011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42490Os.18549.1.S1_at11/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57416.1.S1_x_at2/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57414.1.S1_x_at1/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42500Os.14875.1.S1_at11/1110+22590828..22593204plastid-lipid associated protein 3, chloroplast precursor, putative, expressed
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46999.1.S1_at--1158--531Chr10:22605431..22605674 (25 bp)
ATCGCCACCGGTCGCGGAAACGACG
LOC_Os10g42520
Os.46999.1.S1_at--856--7231Chr10:22605663..22605684 (22 bp)
GTCGCGGAAACGACGGCGTCCATCG
LOC_Os10g42520
Os.46999.1.S1_at--489--7251Chr10:22605699..22605723 (25 bp)
GTCCACCGCCGGTTAAAGCAGGAGC
LOC_Os10g42520
Os.46999.1.S1_at--764--1791Chr10:22605703..22605727 (25 bp)
ACCGCCGGTTAAAGCAGGAGCCGAG
LOC_Os10g42520
Os.46999.1.S1_at--405--8391Chr10:22605769..22605793 (25 bp)
GGCGCTGACGGCTAAGGCTAAGGCT
LOC_Os10g42520
Os.46999.1.S1_at--78--2952Chr10:22605782..22605806 (25 bp)
AAGGCTAAGGCTGGATGTGACGTCA
LOC_Os10g42520
Os.46999.1.S1_at--81--3911Chr10:22605792..22605816 (25 bp)
CTGGATGTGACGTCAGCGCAGCGCA
LOC_Os10g42520
Os.46999.1.S1_at--277--4591Chr10:22605812..22605836 (25 bp)
GCGCAGCTAGCCGTTGGATTCGTTG
LOC_Os10g42520
Os.46999.1.S1_at--17--1551Chr10:22605816..22605840 (25 bp)
AGCTAGCCGTTGGATTCGTTGTTGG
LOC_Os10g42520
Os.46999.1.S1_at--684--6631Chr10:22605833..22606299 (25 bp)
GTTGTTGGAATCGAAGACCCTTCTC
LOC_Os10g42520
Os.46999.1.S1_at--605--5251Chr10:22605840..22606306 (25 bp)
GAATCGAAGACCCTTCTCACTTTTT
LOC_Os10g42520
Target Sequence 
ATCGCCACCGGTCGCGGAAACGACGGCGTCCATCGCCCGCAGCGGCGGCGTCCACCGCCGGTTAAAGCAGGAGCCGAGGC
TGGCCCGCGGCCGAAGGATGGGGATGGCGCTGCGGCGGCGGCGCTGACGGCTAAGGCTAAGGCTGGATGTGACGTCAGCG
CAGCGCAGCTAGCCGTTGGATTCGTTGTTGGAATCGAAGACCCTTCTCACTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis