Browse Element(s) Details


Os.47012.1.S1_at

Description gb:AK069578.1
DB_XREF= gi:32979602
TID=Os.47012.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020M17, full insert sequence.
FL= gb:AK104014.1 gb:AK069578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1005011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47012.1.S1_at--165--991Chr02:5230695..5230719 (25 bp)
AGGATTTGCATTTCGTTTCCACCGA
LOC_Os02g10050
Os.47012.1.S1_at--1045--7771Chr02:5230720..5230744 (25 bp)
GGTGCCCAGATAACTGTGACCGTTA
LOC_Os02g10050
Os.47012.1.S1_at--309--6971Chr02:5230735..5230759 (25 bp)
GTGACCGTTACCTCTGTTAGCAAGA
LOC_Os02g10050
Os.47012.1.S1_at--775--1671Chr02:5230866..5230890 (25 bp)
AGCCGTCACTTCGTTCTGTGAATAT
LOC_Os02g10050
Os.47012.1.S1_at--525--9011Chr02:5230884..5231000 (25 bp)
TGAATATCTAGCACCGCTTCTGCAT
LOC_Os02g10050
Os.47012.1.S1_at--463--4971Chr02:5230997..5231021 (25 bp)
GCATCTCTCTAAACCAGGCAATTCG
LOC_Os02g10050
Os.47012.1.S1_at--242--8211Chr02:5231013..5231037 (25 bp)
GGCAATTCGACTGGAATCGTCCCGA
LOC_Os02g10050
Os.47012.1.S1_at--683--8851Chr02:5231100..5231124 (25 bp)
TGATCGGTCATATGTGTTGGCTGCA
LOC_Os02g10050
Os.47012.1.S1_at--577--51Chr02:5231163..5231187 (25 bp)
ATTGTTGCCATCTTTAGTTCTGTAA
LOC_Os02g10050
Os.47012.1.S1_at--1111--3011Chr02:5231232..5231256 (25 bp)
AATGCTGCCTACCTTGCTTTGGAGA
LOC_Os02g10050
Os.47012.1.S1_at--154--5511Chr02:5231266..5231290 (25 bp)
GAACACTGATCATTGCTTGCTTTTA
LOC_Os02g10050
Target Sequence 
AGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATG
CTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAAC
GATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGG
AATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGG
TCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTA
ACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATG
AACACTGATCATTGCTTGCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis