Browse Element(s) Details


Os.4724.1.S1_at

Description gb:AK070711.1
DB_XREF= gi:32980735
TID=Os.4724.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061H10, full insert sequence.
FL= gb:AK119758.1 gb:AK070711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0287011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein
LOC_Os02g02890Os.4157.1.S1_s_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.4157.1.S1_at11/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.57490.1.S1_x_at10/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02890Os.25594.1.S1_at1/112+1116061..1116976Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os02g02900OsAffx.11869.1.S1_at11/112+1123522..1125414expressed protein
LOC_Os02g02910Os.52234.1.S1_at11/112+1126060..1132613expressed protein
LOC_Os02g02910Os.6440.1.S1_at1/112+1126060..1132613expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4724.1.S1_at--1143--1751Chr02:1103561..1103585 (25 bp)
ACCTCGCGAGGGACTGCTACAACGG
LOC_Os02g02870
Os.4724.1.S1_at--686--10031Chr02:1103401..1103425 (25 bp)
TAGATCTCGCCTAAATCTTCATCAC
LOC_Os02g02870
Os.4724.1.S1_at--1114--3051Chr02:1103388..1103412 (25 bp)
AATCTTCATCACTCCTAAGTCGAAT
LOC_Os02g02870
Os.4724.1.S1_at--558--9071Chr02:1103360..1103384 (25 bp)
TGCTTTAGTTTTGCCGCCGATCTGG
LOC_Os02g02870
Os.4724.1.S1_at--203--491Chr02:1103341..1103365 (25 bp)
ATCTGGGTCACATGGAGAGCGCGTT
LOC_Os02g02870
Os.4724.1.S1_at--879--1651Chr02:1103324..1103348 (25 bp)
AGCGCGTTGCCTGCTATAAAGGAAC
LOC_Os02g02870
Os.4724.1.S1_at--505--10351Chr02:1103247..1103271 (25 bp)
TTTAGTTTTAACTTCTGCTGCTGCT
LOC_Os02g02870
Os.4724.1.S1_at--777--9111Chr02:1103226..1103250 (25 bp)
TGCTGCTCGTGTGATGATGCTTTTG
LOC_Os02g02870
Os.4724.1.S1_at--1015--10711Chr02:1103204..1103228 (25 bp)
TTGCTGCTATGAGTTGGTCTGGTCC
LOC_Os02g02870
Os.4724.1.S1_at--968--9451Chr02:1103187..1103211 (25 bp)
TCTGGTCCTCTGGTTCAGGTTAAGA
LOC_Os02g02870
Os.4724.1.S1_at--1048--3271Chr02:1103116..1103140 (25 bp)
CAAAATCTCTCTCCTTTTTGTGGTT
LOC_Os02g02870
Target Sequence 
ACCTCGCGAGGGACTGCTACAACGGCGGCGGTGGAGGCGGAGGCGGGCGATTCGGCGGTGGAGGCGACCGCTCCTGCTAC
AACTGCGGCGAGGCTGGACACATCGCCCGCGACTGCCACAAGTGATGGATTCACAACACCATCTNNCCCCCCCCCCTNCC
TNCTTAGATCTCGCCTAAATCTTCATCACTCCTAAGTCGAATTATTGCTTTAGTTTTGCCGCCGATCTGGGTCACATGGA
GAGCGCGTTGCCTGCTATAAAGGAACCGCTTGCCTTTTGTTTTTACCTCTTTTTCTTTTTTTGCTATTGGGATTTCGGTT
TAGTTTTAACTTCTGCTGCTGCTGCTCGTGTGATGATGCTTTTGCTGCTATGAGTTGGTCTGGTCCTCTGGTTCAGGTTA
AGAAGACGTGATGTCTGGATTGGTTTTGTGTGTTGGGCGAGGAGATTGACAAAATCTCTCTCCTTTTTGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis