Browse Element(s) Details


Os.47280.1.S1_x_at

Description gb:NM_197419.1
DB_XREF= gi:37536197
TID=Os.47280.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47280 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative gibberellin oxidase (OSJNBb0028C01.33), mRNA.
PROD=putative gibberellin oxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g378802/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0009821biological_processalkaloid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47280.1.S1_x_at--6--6352Chr10:19957914..19957938 (25 bp)
GATGCTAACCAATGGCCTTCTGAAG
NONE
Os.47280.1.S1_x_at--973--8991NONE
TGAAGAGCGCCTGCCATGTTGGAAG
NONE
Os.47280.1.S1_x_at--76--2891Chr10:19958043..19958067 (25 bp)
AAGGAGACAATGAAACTGTACCGTG
NONE
Os.47280.1.S1_x_at--402--8511Chr10:19958255..19958279 (25 bp)
TGGCAAACGGATACTCTCTCTAGTT
NONE
Os.47280.1.S1_x_at--883--531Chr10:19959074..19959094 (21 bp)
ACCCAGGTGAAATCAACGAGTCCGA
NONE
Os.47280.1.S1_x_at--665--2592Chr10:19959084..19959108 (25 bp)
AACGAGTCCGATGATGGCAACTATG
NONE
Os.47280.1.S1_x_at--961--3691Chr10:19959104..19959128 (25 bp)
CTATGGAGCATCAGCTCACTCAGAT
NONE
Os.47280.1.S1_x_at--495--2491Chr10:19959152..19959176 (25 bp)
AACAGATGGCATTCCTGGGCTGCAG
NONE
Os.47280.1.S1_x_at--404--1471Chr10:19959424..19959448 (25 bp)
AGAAGGATAGGCATCCCCAGCTCTG
NONE
Os.47280.1.S1_x_at--1000--5551Chr10:19959628..19959652 (25 bp)
GAAAGGTGGACAAACTGTGTTTTCA
NONE
Os.47280.1.S1_x_at--166--8791Chr10:19959645..19959996 (25 bp)
TGTTTTCAGGTCTACACTGCATCGT
NONE
Target Sequence 
GATGCTAACCAATGGCCTTCTGAAGAGCGCCTGCCATGTTGGAAGGAGACAATGAAACTGTACCGTGNAACNGCACTGGN
TACTGGCAAACGGATACTCTCTCTAGTTGCTCTGAGTTTGAATCTAGACGCTGAATTCTTTGACTGNCCNTTGGNATTTC
TTCGATTGTTGCANTACCCAGGTGAAATCAACGAGTCCGATGATGGCAACTATGGAGCATCAGCTCACTCAGATTATGGA
ATNCTAANCCTTCTAGCAACAGATGGCATTCCTGGGCTGCAGATATGCAGGGAGAAGGATAGGCATCCCCAGCTCTGGGA
AGATGTTCATCACATCGATGGGGCTCTGATTATTAACATTGGCGATTTGCTAGAAAGGTGGACAAACTGTGTTTTCAGGT
CTACACTGCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47280.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis