Browse Element(s) Details


Os.47321.1.S1_at

Description gb:AK108743.1
DB_XREF= gi:32993952
TID=Os.47321.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-E07, full insert sequence.
FL= gb:AK108743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4790011/11SET domain protein SDG117, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47860Os.5993.1.S1_at11/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47860OsAffx.4387.1.S1_at1/112+29271793..29277992Adenylate cyclase family protein, expressed
LOC_Os02g47870Os.11012.1.S1_at8/112+29279108..29281654RING-box protein 1, putative, expressed
LOC_Os02g47880Os.8038.1.S1_at11/112+29281838..29285765Kinesin light chain, putative, expressed
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016571biological_processhistone methylation
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008270molecular_functionzinc ion binding
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47321.1.S1_at--513--811Chr02:29300928..29300952 (25 bp)
ATGGTAACGGAGCAGTCCAATCCTT
LOC_Os02g47900
Os.47321.1.S1_at--161--9211Chr02:29300943..29300967 (25 bp)
TCCAATCCTTAGCATATCTCCAGAA
LOC_Os02g47900
Os.47321.1.S1_at--454--3411Chr02:29300963..29300987 (25 bp)
CAGAAGTTCCTACAATGGCGTCACT
LOC_Os02g47900
Os.47321.1.S1_at--132--871Chr02:29300977..29301001 (25 bp)
ATGGCGTCACTTAGCAAGGGATAGC
LOC_Os02g47900
Os.47321.1.S1_at--400--10091Chr02:29301033..29301057 (25 bp)
TAGGATCTAATTCCCCATGCATCAT
LOC_Os02g47900
Os.47321.1.S1_at--231--8211Chr02:29301060..29301084 (25 bp)
GGAATCATCATATAGGTCTCTCAAC
LOC_Os02g47900
Os.47321.1.S1_at--971--6791Chr02:29301086..29301110 (25 bp)
GTTATTAGGCACACCATACGATTGA
LOC_Os02g47900
Os.47321.1.S1_at--979--9931Chr02:29301102..29301126 (25 bp)
TACGATTGATTTTAGTGTGGCACAC
LOC_Os02g47900
Os.47321.1.S1_at--776--8231Chr02:29301120..29301144 (25 bp)
GGCACACTTATGCTTAACTGATCAT
LOC_Os02g47900
Os.47321.1.S1_at--28--2731Chr02:29301168..29301192 (25 bp)
AAGCAGTTCAGGCTGCATTGTTCGT
LOC_Os02g47900
Os.47321.1.S1_at--44--2871Chr02:29301205..29301229 (25 bp)
AAGTGTCGTTGTAACATACCTTCAT
LOC_Os02g47900
Target Sequence 
ATGGTAACGGAGCAGTCCAATCCTTAGCATATCTCCAGAAGTTCCTACAATGGCGTCACTTAGCAAGGGATAGCAATGTT
TTTTTCTAGAGCAACAATGCAGTGCTAGGATCTAATTCCCCATGCATCATTAGGAATCATCATATAGGTCTCTCAACAGT
TATTAGGCACACCATACGATTGATTTTAGTGTGGCACACTTATGCTTAACTGATCATTTGTTAGGAGCAACCTGAAATGA
AAGCAGTTCAGGCTGCATTGTTCGTAGGCCAGAAGTGAAGTGTCGTTGTAACATACCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis