Browse Element(s) Details


Os.47360.1.S1_x_at

Description gb:NM_192169.1
DB_XREF= gi:34911421
GEN=P0431H09.9
TID=Os.47360.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47360 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative leucine rich repeat containing protein kinase (P0431H09.9), mRNA.
PROD=putative leucine rich repeat containing proteinkinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4992011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47360.1.S1_x_at--238--9851Chr01:28999254..28999278 (25 bp)
TACACCACCATCACTTTGAGGTTGT
LOC_Os01g49920
Os.47360.1.S1_x_at--797--6151Chr01:28999271..28999295 (25 bp)
GAGGTTGTCCTGCATTTTGATTTAA
LOC_Os01g49920
Os.47360.1.S1_x_at--326--10111Chr01:28999324..28999348 (25 bp)
TATGGTTGCACATGTTGCCGACTTC
LOC_Os01g49920
Os.47360.1.S1_x_at--454--331Chr01:28999559..28999583 (25 bp)
ATACAGCTACGGAATTGTCCTCCTC
LOC_Os01g49920
Os.47360.1.S1_x_at--94--6551Chr01:28999649..28999673 (25 bp)
GATTAGTCAAGCATTCCCATATGAG
LOC_Os01g49920
Os.47360.1.S1_x_at--106--271Chr01:28999667..28999691 (25 bp)
ATATGAGCTCTCAAATGTCGCCGAC
LOC_Os01g49920
Os.47360.1.S1_x_at--737--2971Chr01:28999680..28999704 (25 bp)
AATGTCGCCGACTGTAGTCTACAAC
LOC_Os01g49920
Os.47360.1.S1_x_at--256--5231Chr01:28999766..28999790 (25 bp)
GAATATCTGTCTAGCATCCATAATT
LOC_Os01g49920
Os.47360.1.S1_x_at--907--8891Chr01:28999790..28999814 (25 bp)
TGAGTTGGGCTTGCTTTGCTCAAGA
LOC_Os01g49920
Os.47360.1.S1_x_at--236--6331Chr01:28999815..28999839 (25 bp)
GATGCACCTGATGACAGAGTTCCAA
LOC_Os01g49920
Os.47360.1.S1_x_at--801--7091Chr01:28999874..28999898 (25 bp)
GTCAAATTACTACTCTCTGTGGAAG
LOC_Os01g49920
Target Sequence 
TACACCACCATCACTTTGAGGTTGTCCTGCATTTTGATTTAAAGCCAAGCAATATTTTGCTTGACAATGATATGGTTGCA
CATGTTGCCGACTTCGGAATTTCCAAGTTGCTGTTTGGAGATGACAACTCTATCACATTAACGAGTATGCCAGGCACTGT
AGGATACATGGCACCAGAGTTAGGATCAACAGGAAAAGCATCACGCAGAAGTGACGTATACAGCTACGGAATTGTCCTCC
TCGAAGTCTTCACAAGGAAAAAACCAACTGATCCAATGTTCGTCAATGAGTTGACCTTCAGGCAATGGATTAGTCAAGCA
TTCCCATATGAGCTCTCAAATGTCGCCGACTGTAGTCTACAACAAGATGGTCATACGGGTGGTACTGAGGATTCGAGTAA
GCTATCTGAGGATTCAATCATCTTGAATATCTGTCTAGCATCCATAATTGAGTTGGGCTTGCTTTGCTCAAGAGATGCAC
CTGATGACAGAGTTCCAATGAATGAAGTAGTTATCAAGTTAAACAAGATCAAGTCAAATTACTACTCTCTGTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47360.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis