Browse Element(s) Details


Os.47385.1.S1_at

Description gb:AK106521.1
DB_XREF= gi:32991730
TID=Os.47385.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C11, full insert sequence.
FL= gb:AK106521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g407904/11cobW protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47385.1.S1_at--253--3371Chr07:24448234..24448258 (25 bp)
CACCTGTTTGCTCTCATGCAGGCAG
LOC_Os07g40790
Os.47385.1.S1_at--722--3871Chr07:24448237..24448261 (25 bp)
CTGTTTGCTCTCATGCAGGCAGTGA
LOC_Os07g40790
Os.47385.1.S1_at--374--6851Chr07:24448239..24448263 (25 bp)
GTTTGCTCTCATGCAGGCAGTGAGG
LOC_Os07g40790
Os.47385.1.S1_at--757--9091Chr07:24448242..24448266 (25 bp)
TGCTCTCATGCAGGCAGTGAGGGAA
LOC_Os07g40790
Os.47385.1.S1_at--499--2231Chr07:24449581..24449605 (25 bp)
AAATTCATGTTTGTAAGTTTGCCAC
NONE
Os.47385.1.S1_at--158--131Chr07:24449583..24449607 (25 bp)
ATTCATGTTTGTAAGTTTGCCACTC
NONE
Os.47385.1.S1_at--314--9631Chr07:24449585..24449609 (25 bp)
TCATGTTTGTAAGTTTGCCACTCTC
NONE
Os.47385.1.S1_at--557--10291Chr07:24449598..24449622 (25 bp)
TTTGCCACTCTCTTGCAAAATGCAA
NONE
Os.47385.1.S1_at--360--10691Chr07:24449599..24449623 (25 bp)
TTGCCACTCTCTTGCAAAATGCAAA
NONE
Os.47385.1.S1_at--672--2271Chr07:24449615..24449639 (25 bp)
AAATGCAAAACGCAGCTACGTGCTG
NONE
Os.47385.1.S1_at--688--2991Chr07:24449616..24449640 (25 bp)
AATGCAAAACGCAGCTACGTGCTGC
NONE
Target Sequence 
CACCTGTTTGCTCTCATGCAGGCAGTGAGGGAAGTTTATGAAGTTCNNCCAGCTCGAGAATGNNCCAAGACAGAATCTCG
CACAAACAAGATAGTTGTCATAGGTCGCAACTTGGATATCAATATCCTTCAAGATTCATTTAGTCGTTGCAAGCACTGAT
ATNGAAGGGTTTGTTCATCCTGTACCCTGCACCTCCATGCAATCAAATACTGCAAGGAGTTTCTATGGCTCCCCGAAGTA
ATGTGCTTTATGTTTGTCTGTATATCTTCAAAGGTGACAGTGCTGACAGCTTCTTGGCAATGAAGTTCTGCACAACGGAT
GCNATTATCCGACGCGCCATGTTCAACTTTGGAAGAGGAACATGCATCCAGTTACAAGATGATGAACTACTTGTNGAAGA
TTTTAGTTAAGAGTAGTATGCAAACTGATGATCGGCAACATTTCTCGTTGTATGGAACTGACCGAAAGCAATCTTTTTGT
AAGAAACCGATTGGCAACAATAACATACTGGGAGTNGAAATCTGATCCTCAAATTCATGTTTGTAAGTTTGCCACTCTCT
TGCAAAATGCAAAACGCAGCTACGTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis