Browse Element(s) Details


Os.47410.1.S1_at

Description gb:AK102987.1
DB_XREF= gi:32988196
TID=Os.47410.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116C12, full insert sequence.
FL= gb:AK102987.1 gb:AK064035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39280Os.47410.1.S1_at11/117+23510217..23513938expressed protein
LOC_Os07g39290Os.54465.1.S1_at3/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39290Os.49478.1.S1_at1/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39300Os.8749.1.S1_at11/117+23525572..23533785expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47410.1.S1_at--283--671Chr07:23510742..23510766 (25 bp)
ATGAAGACCGTGTGCGTGCTGATTC
LOC_Os07g39280
Os.47410.1.S1_at--476--7311Chr07:23510727..23510751 (25 bp)
GTGCTGATTCTTGGCTGGATCCTGT
LOC_Os07g39280
Os.47410.1.S1_at--4--2011Chr07:23510699..23510723 (25 bp)
ACTCGGCCCTCACCGTGAAGAACAT
LOC_Os07g39280
Os.47410.1.S1_at--970--5751Chr07:23510556..23510580 (25 bp)
GACGTTCCCCTCAAGGCCAGGGTGA
LOC_Os07g39280
Os.47410.1.S1_at--773--3831Chr07:23510436..23510460 (25 bp)
CGTGTTCAAATCCATATATTGCCCC
LOC_Os07g39280
Os.47410.1.S1_at--867--6731Chr07:23510398..23510422 (25 bp)
GTTCTTGAAGCTATCGGCACTTGTG
LOC_Os07g39280
Os.47410.1.S1_at--951--8851Chr07:23510329..23510353 (25 bp)
TGATGCTGATGAACCCCAGCCGGTC
LOC_Os07g39280
Os.47410.1.S1_at--1020--3371Chr07:23510313..23510337 (25 bp)
CAGCCGGTCTCGACGTAGATGACCA
LOC_Os07g39280
Os.47410.1.S1_at--247--6311Chr07:23510296..23510320 (25 bp)
GATGACCATTTTAGAAGCCATGTTC
LOC_Os07g39280
Os.47410.1.S1_at--699--6731Chr07:23510275..23510299 (25 bp)
GTTCTTGATGGCGTGTTGTTATTAT
LOC_Os07g39280
Os.47410.1.S1_at--501--8511Chr07:23510232..23510256 (25 bp)
TGGAATACAGGTGTTTATCCGTTGT
LOC_Os07g39280
Target Sequence 
ATGAAGACCGTGTGCGTGCTGATTCTTGGCTGGATCCTGTTCGACTCGGCCCTCACCGTGAAGAACATCCTCGGGATGNT
GCTCGCCGTGATGGGCATGGTGGTCTACAGCTGGGCCGTGGAGACCGAGAAGAAGGCCTCCGCCCCAATCCCCCGGAACA
AGAGCGACATGNTGGACGACTCCGAGGACGTTCCCCTCAAGGCCAGGGTGAGCGGCCTCCCCTCGTCCGACCTCGAGGAA
GGCGAGATGAAGAGCTAGCTAATGACATATTATTTATTCATTCTTCTTGTTCCTTTCTTTTTTGTACGTGTTCAAATCCA
TATATTGCCCCCATTCTGGGGGAAGTTCTTGAAGCTATCGGCACTTGTGTTAATTTTGCCTCCTCCCTTGTTCCTGNGGT
TCATAGATGATGATGATGCTGATGAACCCCAGCCGGTCTCGACGTAGATGACCATTTTAGAAGCCATGTTCTTGATGGCG
TGTTGTTATTATAGATGACAAGACTTATAATGGAATACAGGTGTTTATCCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis