Browse Element(s) Details

Os.47413.1.S1_x_at

Description

gb:AK066954.1
DB_XREF= gi:32976972
TID=Os.47413.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094H12, full insert sequence.
FL= gb:AK066954.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33100	9/11	Peroxidase family protein, expressed
LOC_Os06g33090	3/11	Peroxidase family protein
LOC_Os08g10630	1/11	ZIP zinc/iron transport family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33050	Os.10827.1.S1_x_at	9/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	Os.46055.2.S1_x_at	4/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33050	OsAffx.18122.1.S1_x_at	1/11	6	+	19245693..19249695	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33060	OsAffx.13833.1.S1_x_at	11/11	6	+	19250252..19250948	hypothetical protein
LOC_Os06g33070	OsAffx.25936.7.S1_s_at	8/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_s_at	7/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.5.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.2.S1_x_at	4/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33070	OsAffx.25936.1.S1_at	1/11	6	+	19252175..19256587	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33080	Os.11554.1.S1_at	11/11	6	+	19257150..19258379	Peroxidase family protein, expressed
LOC_Os06g33090	Os.47413.1.S1_x_at	3/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33090	Os.11554.1.S1_at	1/11	6	+	19263702..19265386	Peroxidase family protein
LOC_Os06g33100	Os.47413.1.S1_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33100	Os.47413.1.S1_x_at	9/11	6	+	19270273..19271665	Peroxidase family protein, expressed
LOC_Os06g33110	OsAffx.20673.1.A1_x_at	2/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20689.1.A1_x_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33110	OsAffx.20673.1.A1_at	1/11	6	+	19273319..19275261	hypothetical protein
LOC_Os06g33120	OsAffx.4986.1.S1_at	11/11	6	+	19280461..19281364	transposon MuDR, putative
LOC_Os06g33130	NA	NA	6	+	19283976..19284290	hypothetical protein
LOC_Os06g33140	OsAffx.26617.4.S1_x_at	8/11	6	+	19286392..19287540	hypothetical protein
LOC_Os06g33150	Os.46314.2.S1_x_at	2/11	6	+	19291435..19297893	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g33150	OsAffx.22896.1.S1_x_at	1/11	6	+	19291435..19297893	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006812	biological_process	cation transport
GO:0006829	biological_process	zinc ion transport
GO:0009613	biological_process	response to pest, pathogen or parasite
GO:0010043	biological_process	response to zinc ion
GO:0030001	biological_process	metal ion transport
GO:0009507	cellular_component	chloroplast
GO:0016020	cellular_component	membrane
GO:0004601	molecular_function	peroxidase activity
GO:0005375	molecular_function	copper ion transporter activity
GO:0005385	molecular_function	zinc ion transporter activity
GO:0008324	molecular_function	cation transporter activity
GO:0046873	molecular_function	metal ion transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47413.1.S1_x_at--488--719	2	Chr06:19270800..19270824 (25 bp)	GTCGGCATGGCACATGACTGCAAGA	LOC_Os06g33100
Os.47413.1.S1_x_at--1037--901	2	Chr06:19270782..19270806 (25 bp)	TGCAAGAACTACGACGACCGCATCT	LOC_Os06g33100
Os.47413.1.S1_x_at--398--145	1	Chr06:19270685..19270709 (25 bp)	AGAAGCACGACAAGGCCACGGCACC	LOC_Os06g33100
Os.47413.1.S1_x_at--1139--441	3	Chr08:6261521..6261797 (25 bp)	GCCATGAACGGCGACGTGTTCTTCG	LOC_Os08g10630
Os.47413.1.S1_x_at--1132--741	1	Chr06:19270512..19270536 (25 bp)	GTGTTCTTCGCCGACTTCACAAGAG	LOC_Os06g33100
Os.47413.1.S1_x_at--1006--439	1	NONE	GCCAACACACATTGTTGATGCTCAT	NONE
Os.47413.1.S1_x_at--1137--633	1	Chr06:19270397..19270421 (25 bp)	GATGCTCATACTGTTGAGTACAACA	LOC_Os06g33100
Os.47413.1.S1_x_at--282--219	1	Chr06:19270375..19270399 (25 bp)	ACACAATTATGTTGCACTCATTTAT	LOC_Os06g33100
Os.47413.1.S1_x_at--72--111	1	Chr06:19270349..19270373 (25 bp)	AGTGTGATATTTCCTTTCGATTTAA	LOC_Os06g33100
Os.47413.1.S1_x_at--1066--627	1	Chr06:19270306..19270330 (25 bp)	GATGTATTTTTCTTTTGTACCTCAA	LOC_Os06g33100
Os.47413.1.S1_x_at--65--75	1	Chr06:19270259..19270283 (25 bp)	ATGTATGGGAGATCACTTTGCCTTG	NONE

Target Sequence

GTCGGCATGGCACATGACTGCAAGAACTACGACGACCGCATCTACAGTCGCGTCGGCCAGGGCGGCGACAGCATCGACCC
ATCCTTCGCGGCGCTGCGCAGGCAGGAGTGCGAGCAGAAGCACGACAAGGCCACGGCACCGTTCGACGAGCGGACGCCAG
CCAAGTTTGACAACGCCTACTACGTCGACCTGCTCGCGAGGCGGGGGCTCCTCACCTCTGACTAGGAGCTCTACACCCAG
GGCTGCCAGACCGGCGACCTGGTGAAGACGTACGCCATGAACGGCGACGTGTTCTTCGCCGACTTCACAAGAGCGATGGT
GAAGATGGGGAACATACGCCCAAAGCATTGGTGGACTCCGGCGGAGGTCAGGCTCAAGTGCTCGGTGGCCAACACACATT
GTTGATGCTCATACTGTTGAGTACAACACAATTATGTTGCACTCATTTATAAGTGTGATATTTCCTTTCGATTTAATTGT
GCATTAAACTGTAAGATGTATTTTTCTTTTGTACCTCAATTTTTTTATTCATTTTTTTATAATGTATGGGAGATCACTTT
GCCTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis