Browse Element(s) Details


Os.47446.1.S1_at

Description gb:AK066298.1
DB_XREF= gi:32976316
TID=Os.47446.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062C01, full insert sequence.
FL= gb:AK066298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0109010/11proline transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein
LOC_Os07g01130OsAffx.5171.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.53615.1.S1_at11/117+71461..80599expressed protein
LOC_Os07g01130Os.6778.1.S1_at7/117+71461..80599expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47446.1.S1_at--992--10211Chr07:47653..47677 (25 bp)
TATTCGCGAGCCCAATGTACGAGTT
LOC_Os07g01090
Os.47446.1.S1_at--980--1312Chr05:6337374..6337646 (25 bp)
AGAGGCACAAGTTGTCCACCTTGCA
NONE
Os.47446.1.S1_at--194--9051Chr07:47398..47422 (25 bp)
TGCAGATATCCTGGCACTGGCTCAA
LOC_Os07g01090
Os.47446.1.S1_at--792--8491Chr07:47367..47391 (25 bp)
TGGCTTCAGCTTATTGTCCATCGCA
LOC_Os07g01090
Os.47446.1.S1_at--631--9151Chr07:47331..47355 (25 bp)
TGCGCTCAGGCTAATCATGGTCGAT
LOC_Os07g01090
Os.47446.1.S1_at--714--7791Chr07:47313..47337 (25 bp)
GGTCGATTCCAGGACTTACCATTTG
LOC_Os07g01090
Os.47446.1.S1_at--1078--3571Chr07:47294..47318 (25 bp)
CATTTGTTTGCTGATCTGTGACTGT
LOC_Os07g01090
Os.47446.1.S1_at--819--3511Chr07:47242..47266 (25 bp)
CATGCACCTTGAATGATCAGCTGTA
LOC_Os07g01090
Os.47446.1.S1_at--466--2531Chr07:47194..47218 (25 bp)
AACTACCGCGAGATGTTTGCCTCAA
LOC_Os07g01090
Os.47446.1.S1_at--68--6911Chr07:47127..47151 (25 bp)
GTATCATTGTACAACTCTGCAGGTT
LOC_Os07g01090
Os.47446.1.S1_at--481--3551Chr07:47086..47110 (25 bp)
CATCGTGCATACCTCTTACTACTTT
NONE
Target Sequence 
TATTCGCGAGCCCAATGTACGAGTTCTTGGACACGAAATACGGCAGCGGACACGGTGGCCCTTTTGCGATCCNCNNNGTG
ATGTTCAGNGTGGNTGTAAGAGGAGGCNTACCTGACNGTCAACANNNTGNTAGCTGCGATGCTCCCANTNNTNGNNGACT
TCATGAGCNTGNCCGGAGCTCTCAGCACCTTCCCCTTGACATTCGTTCTTGCAAATCACATGTACCTGATGGTGAAGAGG
CACAAGTTGTCCACCTTGCAGATATCCTGGCACTGGCTCAATGTTGCTGGCTTCAGCTTATTGTCCATCGCAGCTGCAGT
TGCTGCGCTCAGGCTAATCATGGTCGATTCCAGGACTTACCATTTGTTTGCTGATCTGTGACTGTGATTGAGACCCAAAT
TTTCAGTGCAAACATGCACCTTGAATGATCAGCTGTAATTTCTNCTTTTTCTTAGGGGTGAACTACCGCGAGATGTTTGC
CTCAAAACGTACTGTAGTGATGTTTTTTAGANCAGTAGTGATATATTGTATCATTGTACAACTCTGCAGGTTGAATGAAT
TTTGTGGCCATCGTGCATACCTCTTACTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis