Browse Element(s) Details


Os.47575.1.S1_at

Description gb:AK072807.1
DB_XREF= gi:32982830
TID=Os.47575.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140E08, full insert sequence.
FL= gb:AK072807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3843011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38392Os.51991.1.S1_at11/112+23205840..23214043Leucine Rich Repeat family protein, expressed
LOC_Os02g38400NANA2+23218581..23220069Nuclear protein SkiP, putative
LOC_Os02g38410OsAffx.24631.1.S1_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38410OsAffx.24631.1.S1_s_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38420OsAffx.2906.1.S1_at11/112+23229574..23230095hypothetical protein
LOC_Os02g38420OsAffx.22604.1.S1_x_at1/112+23229574..23230095hypothetical protein
LOC_Os02g38430Os.47575.1.S1_at11/112+23231286..23235548expressed protein
LOC_Os02g38430Os.20406.3.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38430Os.50575.2.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38440Os.5903.1.A1_at10/112+23235758..23238754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g38450NANA2+23240648..23241168hypothetical protein
LOC_Os02g38460Os.2987.3.S1_x_at2/112+23245931..23248303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g38470Os.50593.1.S2_at11/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38470Os.50593.1.S1_at10/112+23249218..23256428B3 DNA binding domain containing protein, expressed
LOC_Os02g38480Os.26372.1.S1_s_at11/112+23259034..23266080expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47575.1.S1_at--541--31Chr02:23234884..23234908 (25 bp)
ATTGGTTCTTTGATCCTCTGATGGT
LOC_Os02g38430
Os.47575.1.S1_at--1015--2671Chr02:23234967..23234991 (25 bp)
AAGCGAGTGCTGCTGACCAGTGATC
LOC_Os02g38430
Os.47575.1.S1_at--1080--3451Chr02:23234984..23235008 (25 bp)
CAGTGATCCGAAGCGCCTCAAAGAG
LOC_Os02g38430
Os.47575.1.S1_at--1116--8951Chr02:23235053..23235076 (24 bp)
TGAAATCGACGCACTTTCCCGGAGA
LOC_Os02g38430
Os.47575.1.S1_at--359--6491Chr02:23235177..23235201 (25 bp)
GATATCAAGGTACCCAACGGCCAAG
LOC_Os02g38430
Os.47575.1.S1_at--272--2511Chr02:23235199..23235223 (25 bp)
AAGCGTCGTTTCGACGACCTTGTCA
LOC_Os02g38430
Os.47575.1.S1_at--462--7111Chr02:23235220..23235244 (25 bp)
GTCAGATCACTCTCGGAAGAGCTCG
LOC_Os02g38430
Os.47575.1.S1_at--169--5031Chr02:23235272..23235296 (25 bp)
GCAGTGTGTCCCAGATGCAGAAACT
LOC_Os02g38430
Os.47575.1.S1_at--490--391Chr02:23235307..23235331 (25 bp)
ATCAGCCGAATGCTCAGCCAGAGAT
LOC_Os02g38430
Os.47575.1.S1_at--589--8391Chr02:23235372..23235396 (25 bp)
GGCGCAGTTGACAATTGATCCCTAA
LOC_Os02g38430
Os.47575.1.S1_at--90--10631Chr02:23235425..23235449 (25 bp)
TTCGTCGTCTTTCTAGAGCTACTTT
LOC_Os02g38430
Target Sequence 
ATTGGTTCTTTGATCCTCTGATGGTCATCAAAGAGCAAATAAAAGCCCAGAATTTTACAGAAGAGGAAGAAGCATACCTC
AAGAAGCGAGTGCTGCTGACCAGTGATCCGAAGCGCCTCAAAGAGGTTGTTCCTCATCTGCCATCATCACTGAATGAGCG
AAAACAAGCTGAAATCGACGCACTTTCCCGGAGATTGCAAGGAATCACAAGGTCGATATCAAGGTACCCAACGGCCAAGC
GTCGTTTCGACGACCTTGTCAGATCACTCTCGGAAGAGCTCGAGAGGACAATGGGTGGCAGCCAATCTGGCAGTGTGTCC
CAGATGCAGAAACTGAGAAGCGGCATCAGCCGAATGCTCAGCCAGAGATCCATGGGGAAGAGGACGAGCAACCGTGGTGA
TGATCGGGAGGCGCAGTTGACAATTGATCCCTAACATCTCCAGAAAGTTCAGACAGAATTTCTTCGTCGTCTTTCTAGAG
CTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis